Last updated on 2025-12-26 23:51:42 CET.
| Package | ERROR | OK |
|---|---|---|
| circle | 13 | |
| mlr3spatiotempcv | 1 | 12 |
| oddsratio | 13 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 2.3.4
Check: tests
Result: ERROR
Running 'testthat.R' [82s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3spatiotempcv")
+ test_check("mlr3spatiotempcv")
+ }
Loading required package: mlr3
Starting 2 test processes.
> test-2-autoplot.R: INFO [17:12:25.008] Using column role 'space' ('SOURCEID') for partitioning
> test-2-autoplot.R: FATAL [17:12:25.115] This method requires to set argument 'fold_id'. See ?autoplot.ResamplingSptCVCstf for more information.
> test-2-autoplot.R: WARN [17:12:29.904] Unfortunately plotly does not support a dynamic arrangement of multiple subplots.
> test-2-autoplot.R: See article 'Visualization of spatiotemporal clusters' (https://mlr3spatiotempcv.mlr-org.com/articles/spatiotemp-viz) for a manual workaround.
> test-2-autoplot.R: Use the objects in the returned list to arrange a custom grid.
> test-2-autoplot.R:
> test-2-autoplot.R: ERROR [17:12:31.427] Neither 'time' or 'plot' column roles are set. At least one is required for 3D plotting. If the variable is only used for plotting purposes, please define argument 'plot_time_var' in `autoplot()` and remove the column role 'feature' for this variable.
> test-2-autoplot.R: WARN [17:12:35.118] Unfortunately plotly does not support a dynamic arrangement of multiple subplots.
> test-2-autoplot.R: See article 'Visualization of spatiotemporal clusters' (https://mlr3spatiotempcv.mlr-org.com/articles/spatiotemp-viz) for a manual workaround.
> test-2-autoplot.R: Use the objects in the returned list to arrange a custom grid.
> test-2-autoplot.R:
> test-2-autoplot.R: [[1]]
> test-2-autoplot.R:
> test-2-autoplot.R: [[2]]
> test-2-autoplot.R:
> test-2-autoplot.R: [[1]]
> test-2-autoplot.R:
> test-2-autoplot.R: [[2]]
> test-2-autoplot.R:
> test-2-autoplot.R: INFO [17:12:40.363] Using column roles 'space' ('SOURCEID') and 'time' ('Date') for partitioning
> test-2-autoplot.R: INFO [17:12:40.592] Using column roles 'space' ('SOURCEID') and 'time' ('Date') for partitioning
> test-2-autoplot.R: FATAL [17:12:40.833] This method requires to set argument 'fold_id'. See ?autoplot.ResamplingSptCVCstf for more information.
> test-2-autoplot.R: WARN [17:12:44.627] Unfortunately plotly does not support a dynamic arrangement of multiple subplots.
> test-2-autoplot.R: See article 'Visualization of spatiotemporal clusters' (https://mlr3spatiotempcv.mlr-org.com/articles/spatiotemp-viz) for a manual workaround.
> test-2-autoplot.R: Use the objects in the returned list to arrange a custom grid.
> test-2-autoplot.R:
> test-2-autoplot.R: [[1]]
> test-2-autoplot.R:
> test-2-autoplot.R: [[2]]
> test-2-autoplot.R:
> test-2-autoplot.R: [[1]]
> test-2-autoplot.R:
> test-2-autoplot.R: [[2]]
> test-1-autoplot.R: Spherical geometry (s2) switched off
> test-1-autoplot.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-1-autoplot.R: are planar
> test-1-autoplot.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-1-autoplot.R: are planar
> test-1-autoplot.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-1-autoplot.R: are planar
> test-1-autoplot.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-1-autoplot.R: are planar
> test-1-autoplot.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-1-autoplot.R: are planar
> test-1-autoplot.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-1-autoplot.R: are planar
> test-2-autoplot.R:
> test-2-autoplot.R: INFO [17:12:58.539] Using column roles 'space' ('SOURCEID') and 'time' ('Date') for partitioning
> test-ResamplingRepeatedSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingRepeatedSpCVBlock.R: are planar
> test-ResamplingRepeatedSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingRepeatedSpCVBlock.R: are planar
> test-ResamplingRepeatedSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingRepeatedSpCVBlock.R: are planar
> test-ResamplingRepeatedSpCVBlock.R: This function is deprecated! Please use 'cv_spatial' instead.
> test-ResamplingRepeatedSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingRepeatedSpCVBlock.R: are planar
> test-ResamplingRepeatedSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingRepeatedSpCVBlock.R: are planar
> test-ResamplingRepeatedSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingRepeatedSpCVBlock.R: are planar
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:16.414] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:16.495] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:16.524] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:16.540] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:16.556] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:16.763] Using column role 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:16.782] Using column role 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:16.801] Using column role 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:16.819] Using column role 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:16.835] Using column role 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.061] Using column roles 'space' ('polygon') and 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.093] Using column roles 'space' ('polygon') and 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.126] Using column roles 'space' ('polygon') and 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.160] Using column roles 'space' ('polygon') and 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.195] Using column roles 'space' ('polygon') and 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.540] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.681] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.699] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.717] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.733] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.747] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.949] Using column role 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.960] Using column role 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.974] Using column role 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.987] Using column role 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:17.998] Using column role 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:18.197] Using column roles 'space' ('polygon') and 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:18.237] Using column roles 'space' ('polygon') and 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:18.272] Using column roles 'space' ('polygon') and 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:18.298] Using column roles 'space' ('polygon') and 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:18.328] Using column roles 'space' ('polygon') and 'time' ('day') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:18.618] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:18.741] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:18.758] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:18.772] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:18.788] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:18.800] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:19.015] Using column role 'space' ('polygon') for partitioning
> test-ResamplingRepeatedSptCVCstf.R: INFO [17:13:19.067] Using column role 'time' ('day') for partitioning
Saving _problems/test-ResamplingRepeatedSptCVCstf-144.R
Saving _problems/test-ResamplingRepeatedSptCVCstf-407.R
> test-ResamplingSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingSpCVBlock.R: are planar
> test-ResamplingSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingSpCVBlock.R: are planar
> test-ResamplingSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingSpCVBlock.R: are planar
> test-ResamplingSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingSpCVBlock.R: are planar
> test-ResamplingSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingSpCVBlock.R: are planar
> test-ResamplingSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingSpCVBlock.R: are planar
> test-ResamplingSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingSpCVBlock.R: are planar
> test-ResamplingSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingSpCVBlock.R: are planar
> test-ResamplingSpCVBlock.R: although coordinates are longitude/latitude, st_intersects assumes that they
> test-ResamplingSpCVBlock.R: are planar
> test-ResamplingSptCVCstf.R: INFO [17:13:27.578] Using column role 'space' ('polygon') for partitioning
> test-ResamplingSptCVCstf.R: INFO [17:13:27.641] Using column role 'time' ('day') for partitioning
> test-ResamplingSptCVCstf.R: INFO [17:13:27.696] Using column roles 'space' ('polygon') and 'time' ('day') for partitioning
> test-ResamplingSptCVCstf.R: INFO [17:13:27.795] Using column role 'space' ('polygon') for partitioning
> test-ResamplingSptCVCstf.R: INFO [17:13:27.900] Using column role 'space' ('polygon') for partitioning
> test-ResamplingSptCVCstf.R: INFO [17:13:27.973] Using column role 'time' ('day') for partitioning
> test-ResamplingSptCVCstf.R: INFO [17:13:28.046] Using column roles 'space' ('polygon') and 'time' ('day') for partitioning
> test-ResamplingSptCVCstf.R: INFO [17:13:28.179] Using column role 'space' ('polygon') for partitioning
> test-ResamplingSptCVCstf.R: INFO [17:13:28.275] Using column role 'space' ('polygon') for partitioning
> test-ResamplingSptCVCstf.R: INFO [17:13:28.346] Using column role 'space' ('polygon') for partitioning
> test-ResamplingSptCVCstf.R: INFO [17:13:28.388] Using column role 'time' ('day') for partitioning
Saving _problems/test-ResamplingSptCVCstf-144.R
Saving _problems/test-ResamplingSptCVCstf-407.R
Saving _problems/test-autotuner-38.R
[ FAIL 5 | WARN 1 | SKIP 24 | PASS 972 ]
══ Skipped tests (24) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-1-autoplot.R:20:1', 'test-1-autoplot.R:50:1',
'test-1-autoplot.R:79:1', 'test-1-autoplot.R:105:1',
'test-1-autoplot.R:142:1', 'test-1-autoplot.R:162:1',
'test-1-autoplot.R:203:1', 'test-1-autoplot.R:234:1',
'test-1-autoplot.R:268:3', 'test-1-autoplot.R:291:1',
'test-1-autoplot.R:322:1', 'test-1-autoplot.R:353:1',
'test-2-autoplot.R:84:1', 'test-2-autoplot.R:143:1',
'test-2-autoplot.R:189:1', 'test-2-autoplot.R:209:1',
'test-2-autoplot.R:304:1', 'test-2-autoplot.R:356:1',
'test-autoplot_buffer.R:3:1'
• On Windows (2): 'test-2-autoplot.R:9:3', 'test-2-autoplot.R:55:3'
• empty test (1): 'test-helper-DataBackend.R:1:1'
• {raster} is not installed (1): 'test-mlr3pipelines-graph-integration.R:4:3'
• {skmeans} is not installed (1): 'test-mlr_sptcv_generic.R:70:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ResamplingRepeatedSptCVCstf.R:144:3'): stratify on target and group by space works ──
Error in ``[.data.table`(group_space, , `:=`(fold_space, shuffle(seq_len0(.N)%%folds + 1)), by = target)`: attempt access index 2/2 in VECTOR_ELT
Backtrace:
▆
1. └─resampling$instantiate(task) at test-ResamplingRepeatedSptCVCstf.R:144:3
2. └─mlr3spatiotempcv:::.__ResamplingRepeatedSptCVCstf__instantiate(...)
3. └─private$.sample(task)
4. └─mlr3spatiotempcv:::.__ResamplingRepeatedSptCVCstf__.sample(...)
5. └─mlr3misc::map(...)
6. └─base::lapply(.x, .f, ...)
7. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
8. └─mlr3spatiotempcv:::sample_cast(task, pv$stratify, pv$folds)
9. ├─...[]
10. └─data.table:::`[.data.table`(...)
── Error ('test-ResamplingRepeatedSptCVCstf.R:407:3'): stratify on target and group by space works with multiple observations within space unit ──
Error in ``[.data.table`(group_space, , `:=`(fold_space, shuffle(seq_len0(.N)%%folds + 1)), by = target)`: attempt access index 2/2 in VECTOR_ELT
Backtrace:
▆
1. └─resampling$instantiate(task) at test-ResamplingRepeatedSptCVCstf.R:407:3
2. └─mlr3spatiotempcv:::.__ResamplingRepeatedSptCVCstf__instantiate(...)
3. └─private$.sample(task)
4. └─mlr3spatiotempcv:::.__ResamplingRepeatedSptCVCstf__.sample(...)
5. └─mlr3misc::map(...)
6. └─base::lapply(.x, .f, ...)
7. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
8. └─mlr3spatiotempcv:::sample_cast(task, pv$stratify, pv$folds)
9. ├─...[]
10. └─data.table:::`[.data.table`(...)
── Error ('test-ResamplingSptCVCstf.R:144:3'): stratify on target and group by space works ──
Error in ``[.data.table`(group_space, , `:=`(fold_space, shuffle(seq_len0(.N)%%folds + 1)), by = target)`: attempt access index 2/2 in VECTOR_ELT
Backtrace:
▆
1. └─resampling$instantiate(task) at test-ResamplingSptCVCstf.R:144:3
2. └─mlr3spatiotempcv:::.__ResamplingSptCVCstf__instantiate(...)
3. └─private$.sample(task)
4. └─mlr3spatiotempcv:::.__ResamplingSptCVCstf__.sample(...)
5. └─mlr3spatiotempcv:::sample_cast(task, pv$stratify, pv$folds)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-ResamplingSptCVCstf.R:407:3'): stratify on target and group by space works with multiple observations within space unit ──
Error in ``[.data.table`(group_space, , `:=`(fold_space, shuffle(seq_len0(.N)%%folds + 1)), by = target)`: attempt access index 2/2 in VECTOR_ELT
Backtrace:
▆
1. └─resampling$instantiate(task) at test-ResamplingSptCVCstf.R:407:3
2. └─mlr3spatiotempcv:::.__ResamplingSptCVCstf__instantiate(...)
3. └─private$.sample(task)
4. └─mlr3spatiotempcv:::.__ResamplingSptCVCstf__.sample(...)
5. └─mlr3spatiotempcv:::sample_cast(task, pv$stratify, pv$folds)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-autotuner.R:38:3'): AutoTuner works with sptcv methods ─────────
Error in ``[.data.table`(data, , `:=`("task_hash", task[[1L]]$hash), by = "uhash")`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─mlr3::benchmark(grid) at test-autotuner.R:38:3
2. └─mlr3:::future_map(...)
3. └─future.apply::future_mapply(...)
4. └─future.apply:::future_xapply(...)
5. └─base::tryCatch(...)
6. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. └─base (local) tryCatchOne(...)
8. └─value[[3L]](cond)
9. └─future.apply:::onError(e, futures = fs, debug = debug)
[ FAIL 5 | WARN 1 | SKIP 24 | PASS 972 ]
Deleting unused snapshots:
'1-autoplot/autoplot-show-blocks-true-show-labels-true.svg',
'2-autoplot/repsptcvcstf-2d-space-var-fold-1-2-rep-2.svg',
'2-autoplot/repsptcvcstf-2d-space-var-fold-1-rep-2.svg',
'2-autoplot/sptcvcstf-2d-space-var-all-test-sets.svg',
'2-autoplot/sptcvcstf-2d-space-var-fold-1-2.svg',
'2-autoplot/sptcvcstf-2d-space-var-fold-1.svg',
'2-autoplot/sptcvcstf-2d-time-var-all-test-sets.svg',
'2-autoplot/sptcvcstf-2d-time-var-fold-1-2-rep-2.svg',
'2-autoplot/sptcvcstf-2d-time-var-fold-1-2-sample-fold-n.svg',
'2-autoplot/sptcvcstf-2d-time-var-fold-1-2.svg',
'2-autoplot/sptcvcstf-2d-time-var-fold-1-rep-2.svg',
'2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg',
'2-autoplot/sptcvcstf-2d-time-var-fold-1.svg', and
'2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg'
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 13