CRAN Package Check Results for Package rliger

Last updated on 2025-08-23 12:48:40 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2.0 137.45 549.85 687.30 ERROR
r-devel-linux-x86_64-debian-gcc 2.2.0 86.35 372.46 458.81 ERROR
r-devel-linux-x86_64-fedora-clang 2.2.0 1126.13 ERROR
r-devel-linux-x86_64-fedora-gcc 2.2.0 1117.10 ERROR
r-devel-windows-x86_64 2.2.0 146.00 545.00 691.00 ERROR
r-patched-linux-x86_64 2.2.0 134.36 539.70 674.06 OK
r-release-linux-x86_64 2.2.0 126.84 540.64 667.48 OK
r-release-macos-arm64 2.2.0 187.00 OK
r-release-macos-x86_64 2.2.0 390.00 OK
r-release-windows-x86_64 2.2.0 149.00 611.00 760.00 OK
r-oldrel-macos-arm64 2.2.0 219.00 NOTE
r-oldrel-macos-x86_64 2.2.0 433.00 NOTE
r-oldrel-windows-x86_64 2.2.0 179.00 768.00 947.00 OK

Check Details

Version: 2.2.0
Check: examples
Result: ERROR Running examples in ‘rliger-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: read10XH5 > ### Title: Read 10X HDF5 file > ### Aliases: read10XH5 read10XH5Mem read10XH5Delay > > ### ** Examples > > matrix <- read10XH5( + filename = system.file("extdata/ctrl.h5", package = "rliger"), + inMemory = TRUE + ) > class(matrix) # Should show dgCMatrix [1] "dgCMatrix" attr(,"package") [1] "Matrix" > if (requireNamespace("HDF5Array", quietly = TRUE)) { + matrix <- read10XH5( + filename = system.file("extdata/ctrl.h5", package = "rliger"), + inMemory = FALSE + ) + print(class(matrix)) # Should show TENxMatrix + } Failed with error: ‘unused argument (quitely = TRUE)’ Error in `read10XH5Delay()`: ✖ Package HDF5Array is required for reading 10X H5 data into DelayedArray. ℹ Please install with `BiocManager::install('HDF5Array')`. Backtrace: ▆ 1. └─rliger::read10XH5(...) 2. └─rliger::read10XH5Delay(filename, useNames, featureMakeUniq) 3. └─cli::cli_abort(...) 4. └─rlang::abort(...) Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed plotPairwiseDEGHeatmap 7.334 0.107 8.897 createLiger 6.259 0.139 8.048 plotClusterFactorDot 4.704 0.246 6.310 plotClusterGeneViolin 4.159 0.298 5.981 plotMarkerHeatmap 4.228 0.145 5.550 Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.2.0
Check: examples
Result: ERROR Running examples in ‘rliger-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: read10XH5 > ### Title: Read 10X HDF5 file > ### Aliases: read10XH5 read10XH5Mem read10XH5Delay > > ### ** Examples > > matrix <- read10XH5( + filename = system.file("extdata/ctrl.h5", package = "rliger"), + inMemory = TRUE + ) > class(matrix) # Should show dgCMatrix [1] "dgCMatrix" attr(,"package") [1] "Matrix" > if (requireNamespace("HDF5Array", quietly = TRUE)) { + matrix <- read10XH5( + filename = system.file("extdata/ctrl.h5", package = "rliger"), + inMemory = FALSE + ) + print(class(matrix)) # Should show TENxMatrix + } Failed with error: ‘unused argument (quitely = TRUE)’ Error in `read10XH5Delay()`: ✖ Package HDF5Array is required for reading 10X H5 data into DelayedArray. ℹ Please install with `BiocManager::install('HDF5Array')`. Backtrace: ▆ 1. └─rliger::read10XH5(...) 2. └─rliger::read10XH5Delay(filename, useNames, featureMakeUniq) 3. └─cli::cli_abort(...) 4. └─rlang::abort(...) Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed plotPairwiseDEGHeatmap 5.842 0.427 6.538 Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.2.0
Check: examples
Result: ERROR Running examples in ‘rliger-Ex.R’ failed The error most likely occurred in: > ### Name: read10XH5 > ### Title: Read 10X HDF5 file > ### Aliases: read10XH5 read10XH5Mem read10XH5Delay > > ### ** Examples > > matrix <- read10XH5( + filename = system.file("extdata/ctrl.h5", package = "rliger"), + inMemory = TRUE + ) > class(matrix) # Should show dgCMatrix [1] "dgCMatrix" attr(,"package") [1] "Matrix" > if (requireNamespace("HDF5Array", quietly = TRUE)) { + matrix <- read10XH5( + filename = system.file("extdata/ctrl.h5", package = "rliger"), + inMemory = FALSE + ) + print(class(matrix)) # Should show TENxMatrix + } Failed with error: ‘unused argument (quitely = TRUE)’ Error in `read10XH5Delay()`: ✖ Package HDF5Array is required for reading 10X H5 data into DelayedArray. ℹ Please install with `BiocManager::install('HDF5Array')`. Backtrace: ▆ 1. └─rliger::read10XH5(...) 2. └─rliger::read10XH5Delay(filename, useNames, featureMakeUniq) 3. └─cli::cli_abort(...) 4. └─rlang::abort(...) Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 2.2.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘reactome.db’ Flavor: r-oldrel-macos-arm64

Version: 2.2.0
Check: installed package size
Result: NOTE installed size is 11.1Mb sub-directories of 1Mb or more: R 2.1Mb libs 6.9Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

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