CRAN Package Check Results for Maintainer Selcuk Korkmaz <selcukorkmaz at gmail.com>

CRAN Package Check Results for Maintainer ‘Selcuk Korkmaz <selcukorkmaz at gmail.com>’

Last updated on 2026-02-07 05:50:52 CET.

Package	ERROR	OK
bioLeak		4
fastml		13
genSEIR		13
MVN		13
PubChemR		13
rPDBapi	1	12

Package bioLeak

Current CRAN status: OK: 4

Package fastml

Current CRAN status: OK: 13

Package genSEIR

Current CRAN status: OK: 13

Package MVN

Current CRAN status: OK: 13

Package rPDBapi

Current CRAN status: ERROR: 1, OK: 12

Version: 2.1.2
Check: examples
Result: ERROR Running examples in ‘rPDBapi-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: data_fetcher > ### Title: Fetch RCSB PDB Data Based on Specified Criteria > ### Aliases: data_fetcher > > ### ** Examples > > # Example 1: Fetching basic entry information > properties <- list(cell = c("length_a", "length_b", "length_c"), exptl = c("method")) > data_fetcher( + id = c("4HHB"), + data_type = "ENTRY", + properties = properties, + return_as_dataframe = TRUE + ) Error in value[[3L]](cond) : Failed to fetch data from PDB. Error: ERROR: GraphQL query execution failed. Details: Timeout was reached [data.rcsb.org]: Connection timed out after 10000 milliseconds Calls: data_fetcher ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [0m/11m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rPDBapi) > > test_check("rPDBapi") Saving _problems/test_find_results-3.R Saving _problems/test_find_results-12.R [ FAIL 2 | WARN 2 | SKIP 0 | PASS 66 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_find_results.R:3:3'): find_papers returns correct paper titles ── Error in `value[[3L]](cond)`: Failed to fetch search results for term 'ribosome'. Error: All retrieval attempts failed after 1 tries. Please check the search term, query type, and your network connection. Backtrace: ▆ 1. └─rPDBapi::find_papers("ribosome", max_results = 2) at test_find_results.R:3:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_find_results.R:12:3'): find_results returns correct field information ── Error in `value[[3L]](cond)`: Failed to fetch search results for term 'crispr'. Error: All retrieval attempts failed after 1 tries. Please check the search term, query type, and your network connection. Backtrace: ▆ 1. └─rPDBapi::find_results("crispr", field = "citation") at test_find_results.R:12:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) [ FAIL 2 | WARN 2 | SKIP 0 | PASS 66 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc