CRAN Package Check Results for Package shazam

Last updated on 2025-12-26 17:48:50 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.0 51.39 624.94 676.33 ERROR
r-devel-linux-x86_64-debian-gcc 1.3.0 39.14 435.54 474.68 ERROR
r-devel-linux-x86_64-fedora-clang 1.3.0 96.00 1032.82 1128.82 ERROR
r-devel-linux-x86_64-fedora-gcc 1.3.0 94.00 1018.09 1112.09 ERROR
r-devel-windows-x86_64 1.3.0 52.00 637.00 689.00 ERROR
r-patched-linux-x86_64 1.3.0 53.02 597.36 650.38 OK
r-release-linux-x86_64 1.3.0 51.07 602.37 653.44 OK
r-release-macos-arm64 1.3.0 OK
r-release-macos-x86_64 1.3.0 33.00 497.00 530.00 OK
r-release-windows-x86_64 1.3.0 51.00 664.00 715.00 OK
r-oldrel-macos-arm64 1.3.0 OK
r-oldrel-macos-x86_64 1.3.0 34.00 534.00 568.00 OK
r-oldrel-windows-x86_64 1.3.0 72.00 822.00 894.00 OK

Additional issues

M1mac

Check Details

Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Baseline-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Baseline-Vignette.Rmd’ --- re-building ‘DistToNearest-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘DistToNearest-Vignette.Rmd’ --- re-building ‘Mutation-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Mutation-Vignette.Rmd’ --- re-building ‘Shmulate-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Shmulate-Vignette.Rmd’ --- re-building ‘Targeting-Vignette.Rmd’ using rmarkdown Quitting from Targeting-Vignette.Rmd:166-170 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `names(x) <- value`: ! 'names' attribute [2] must be the same length as the vector [0] --- Backtrace: x 1. \-shazam::plotMutability(model, nucleotides = "A", style = "hedgehog") 2. \-base::`colnames<-`(`*tmp*`, value = paste0("pos", 1:ncol(mut_positions))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: 'names' attribute [2] must be the same length as the vector [0] --- failed re-building ‘Targeting-Vignette.Rmd’ SUMMARY: processing the following file failed: ‘Targeting-Vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Baseline-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Baseline-Vignette.Rmd’ --- re-building ‘DistToNearest-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘DistToNearest-Vignette.Rmd’ --- re-building ‘Mutation-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Mutation-Vignette.Rmd’ --- re-building ‘Shmulate-Vignette.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Shmulate-Vignette.Rmd’ --- re-building ‘Targeting-Vignette.Rmd’ using rmarkdown Quitting from Targeting-Vignette.Rmd:166-170 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `names(x) <- value`: ! 'names' attribute [2] must be the same length as the vector [0] --- Backtrace: x 1. \-shazam::plotMutability(model, nucleotides = "A", style = "hedgehog") 2. \-base::`colnames<-`(`*tmp*`, value = paste0("pos", 1:ncol(mut_positions))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: 'names' attribute [2] must be the same length as the vector [0] --- failed re-building ‘Targeting-Vignette.Rmd’ SUMMARY: processing the following file failed: ‘Targeting-Vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Baseline-Vignette.Rmd' using rmarkdown pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. --- finished re-building 'Baseline-Vignette.Rmd' --- re-building 'DistToNearest-Vignette.Rmd' using rmarkdown pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. --- finished re-building 'DistToNearest-Vignette.Rmd' --- re-building 'Mutation-Vignette.Rmd' using rmarkdown pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. --- finished re-building 'Mutation-Vignette.Rmd' --- re-building 'Shmulate-Vignette.Rmd' using rmarkdown pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows. pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows. --- finished re-building 'Shmulate-Vignette.Rmd' --- re-building 'Targeting-Vignette.Rmd' using rmarkdown Quitting from Targeting-Vignette.Rmd:166-170 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `names(x) <- value`: ! 'names' attribute [2] must be the same length as the vector [0] --- Backtrace: x 1. \-shazam::plotMutability(model, nucleotides = "A", style = "hedgehog") 2. \-base::`colnames<-`(`*tmp*`, value = paste0("pos", 1:ncol(mut_positions))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: 'names' attribute [2] must be the same length as the vector [0] --- failed re-building 'Targeting-Vignette.Rmd' SUMMARY: processing the following file failed: 'Targeting-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64

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