Last updated on 2026-03-02 17:51:58 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| morse | 14 | ||
| morseDR | 14 | ||
| morseTKTD | 3 | 11 | |
| rbioacc | 3 | 11 | |
| rPBK | 5 | 9 | |
| spacemodR | 1 | 13 |
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: NOTE: 3, OK: 11
Version: 0.1.3
Check: installed package size
Result: NOTE
installed size is 86.8Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 85.2Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.1.3
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 11
Version: 1.3.1
Check: installed package size
Result: NOTE
installed size is 66.2Mb
sub-directories of 1Mb or more:
libs 65.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.3.1
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 9
Version: 0.2.5
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘rstantools’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.5
Check: installed package size
Result: NOTE
installed size is 88.8Mb
sub-directories of 1Mb or more:
libs 87.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.2.5
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 13
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Tutorial.Rmd’ using rmarkdown
[gannet:75281:0:75281] Caught signal 11 (Segmentation fault: Sent by the kernel at address (nil))
==== backtrace (tid: 75281) ====
0 /lib64/libucs.so.0(ucs_handle_error+0x2e4) [0x7f46b6be7df4]
1 /lib64/libucs.so.0(+0x17aed) [0x7f46b6be9aed]
2 /lib64/libucs.so.0(+0x17cbd) [0x7f46b6be9cbd]
3 /lib64/libc.so.6(+0x19c30) [0x7f46cd326c30]
4 /data/gannet/ripley/R/R-clang/bin/exec/R(ALTREP_LENGTH+0x4) [0x558729afbed4]
5 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x194f1f) [0x558729c7df1f]
6 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x191add) [0x558729c7aadd]
7 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xd31cd) [0x558729bbc1cd]
8 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc702c) [0x558729bb002c]
9 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x558729baf7b5]
10 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde849) [0x558729bc7849]
11 /data/gannet/ripley/R/R-clang/bin/exec/R(R_execMethod+0x2cb) [0x558729bca65b]
12 /data/gannet/ripley/R/R-clang/library/methods/libs/methods.so(+0x175b) [0x7f46cdff075b]
13 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12d4ca) [0x558729c164ca]
14 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcd4b3) [0x558729bb64b3]
15 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc702c) [0x558729bb002c]
16 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x558729baf7b5]
17 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde849) [0x558729bc7849]
18 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xddd4c) [0x558729bc6d4c]
19 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc7956) [0x558729bb0956]
20 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12e187) [0x558729c17187]
21 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe5dae) [0x558729bcedae]
22 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x1916a2) [0x558729c7a6a2]
23 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x1914ef) [0x558729c7a4ef]
24 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x558729baf9e0]
25 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe43c1) [0x558729bcd3c1]
26 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x558729baf9e0]
27 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe51e8) [0x558729bce1e8]
28 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcdca4) [0x558729bb6ca4]
29 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc702c) [0x558729bb002c]
30 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x558729baf7b5]
31 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc7284) [0x558729bb0284]
32 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x558729baf87e]
33 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe56c7) [0x558729bce6c7]
34 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x128738) [0x558729c11738]
35 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcdf06) [0x558729bb6f06]
36 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc702c) [0x558729bb002c]
37 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x558729baf7b5]
38 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc7284) [0x558729bb0284]
39 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x558729baf87e]
40 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc7284) [0x558729bb0284]
41 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdafe0) [0x558729bc3fe0]
42 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcb6b9) [0x558729bb46b9]
43 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc702c) [0x558729bb002c]
44 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x558729baf7b5]
45 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde849) [0x558729bc7849]
46 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xddd4c) [0x558729bc6d4c]
47 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x558729bafc06]
48 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe51e8) [0x558729bce1e8]
49 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcdca4) [0x558729bb6ca4]
50 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc702c) [0x558729bb002c]
51 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x558729baf7b5]
52 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde849) [0x558729bc7849]
53 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xddd4c) [0x558729bc6d4c]
54 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x558729bafc06]
55 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde849) [0x558729bc7849]
56 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xddd4c) [0x558729bc6d4c]
57 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcd533) [0x558729bb6533]
58 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc702c) [0x558729bb002c]
59 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x558729baf7b5]
60 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde849) [0x558729bc7849]
61 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xddd4c) [0x558729bc6d4c]
=================================
*** caught segfault ***
address 0x4d200012611, cause 'unknown'
Traceback:
1: .replace_all(x, value)
2: .local(x, i, j, ..., value = value)
3: `[<-`(`*tmp*`, , value = new("SpatRaster", pntr = new("Rcpp_SpatRaster", .xData = <environment>)))
4: `[<-`(`*tmp*`, , value = new("SpatRaster", pntr = new("Rcpp_SpatRaster", .xData = <environment>)))
5: eval(expr, envir)
6: eval(expr, envir)
7: withVisible(eval(expr, envir))
8: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
9: eval(call)
10: eval(call)
11: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
12: doWithOneRestart(return(expr), restart)
13: withOneRestart(expr, restarts[[1L]])
14: withRestartList(expr, restarts[-nr])
15: doWithOneRestart(return(expr), restart)
16: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
17: withRestartList(expr, restarts)
18: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
19: evaluate::evaluate(...)
20: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
21: in_dir(input_dir(), expr)
22: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
23: eng_r(options)
24: block_exec(params)
25: call_block(x)
26: process_group(group)
27: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
28: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
29: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
30: process_file(text, output)
31: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
32: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
33: vweave_rmarkdown(...)
34: engine$weave(file, quiet = quiet, encoding = enc)
35: doTryCatch(return(expr), name, parentenv, handler)
36: tryCatchOne(expr, names, parentenv, handlers[[1L]])
37: tryCatchList(expr, classes, parentenv, handlers)
38: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
39: tools::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/spacemodR.Rcheck/vign_test/spacemodR", skip = TRUE, ser_elibs = "/tmp/Rtmpr8UyFM/file52cb67ce5b15.rds")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang