DESNP: Differentially Expressed Single Nucleotide Polymorphism

Provides a framework for the identification and analysis of Differentially Expressed Single Nucleotide Polymorphisms (deSNPs) using high-throughput sequencing data. It enables users to import SNP count data from variant files, perform allele-specific read count extraction, and statistically detect SNPs showing significant differences in allele expression between biological conditions or sample groups. This package contains tools for calculating SNP-index and Delta SNP-index from VCF-derived allele depth data with statistical testing and filtering, including sliding-window analysis of genomic regions.

Version:	0.1.0
Depends:	R (≥ 4.1.0)
Imports:	vcfR, dplyr, tidyr, magrittr, tidyselect, VGAM, stats, utils, GenomicRanges, IRanges, S4Vectors, GenomeInfoDb, tools, ggplot2
Published:	2026-03-19
DOI:	10.32614/CRAN.package.DESNP (may not be active yet)
Author:	Sayanti Guha Majumdar [aut, cre], Saima Bano [aut], Nandita Banerjee [aut], Rahul Kumar Tiwari [aut], Dipro Sinha [aut], Subham Ghosh [aut], Sanjeev Kumar [aut]
Maintainer:	Sayanti Guha Majumdar <sayanti23gm at gmail.com>
License:	GPL-3
NeedsCompilation:	no
CRAN checks:	DESNP results

Documentation:

Reference manual:

DESNP.html , DESNP.pdf

Downloads:

Package source:	DESNP_0.1.0.tar.gz
Windows binaries:	r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries:	r-release (arm64): not available, r-oldrel (arm64): DESNP_0.1.0.tgz, r-release (x86_64): not available, r-oldrel (x86_64): not available

Linking:

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