The correlations and linkage disequilibrium between tests can vary as a function of minor allele frequency thresholds used to filter variants, and also varies with different choices of test statistic for region-based tests. Appropriate genome-wide significance thresholds can be estimated empirically through permutation on only a small proportion of the whole genome.
| Version: | 1.2 |
| Published: | 2016-09-12 |
| DOI: | 10.32614/CRAN.package.GWsignif |
| Author: | ChangJiang Xu and Celia M.T. Greenwood |
| Maintainer: | ChangJiang Xu <changjiang.h.xu at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | GWsignif results |
| Reference manual: | GWsignif.pdf |
| Package source: | GWsignif_1.2.tar.gz |
| Windows binaries: | r-devel: GWsignif_1.2.zip, r-release: GWsignif_1.2.zip, r-oldrel: GWsignif_1.2.zip |
| macOS binaries: | r-devel (arm64): GWsignif_1.2.tgz, r-release (arm64): GWsignif_1.2.tgz, r-oldrel (arm64): GWsignif_1.2.tgz, r-devel (x86_64): GWsignif_1.2.tgz, r-release (x86_64): GWsignif_1.2.tgz, r-oldrel (x86_64): GWsignif_1.2.tgz |
| Old sources: | GWsignif archive |
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