GenoPop: Genotype Imputation and Population Genomics Efficiently from Variant Call Formatted (VCF) Files

Tools for efficient processing of large, whole genome genotype data sets in variant call format (VCF). It includes several functions to calculate commonly used population genomic metrics and a method for reference panel free genotype imputation, which is described in the preprint Gurke & Mayer (2024) <doi:10.22541/au.172515591.10119928/v1>.

Version:	1.0.0
Imports:	Rsamtools, GenomicRanges, foreach, doParallel, parallel, missForest, IRanges
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0), withr
Published:	2024-11-25
DOI:	10.32614/CRAN.package.GenoPop
Author:	Marie Gurke [aut, cre]
Maintainer:	Marie Gurke <margurke at gmail.com>
License:	GPL (≥ 3)
NeedsCompilation:	no
Citation:	GenoPop citation info
Materials:	README
CRAN checks:	GenoPop results

Documentation:

Reference manual:	GenoPop.pdf
Vignettes:	GenoPop (source, R code)

Downloads:

Package source:	GenoPop_1.0.0.tar.gz
Windows binaries:	r-devel: GenoPop_1.0.0.zip, r-release: GenoPop_1.0.0.zip, r-oldrel: GenoPop_1.0.0.zip
macOS binaries:	r-devel (arm64): GenoPop_1.0.0.tgz, r-release (arm64): GenoPop_1.0.0.tgz, r-oldrel (arm64): GenoPop_1.0.0.tgz, r-devel (x86_64): GenoPop_1.0.0.tgz, r-release (x86_64): GenoPop_1.0.0.tgz, r-oldrel (x86_64): GenoPop_1.0.0.tgz
Old sources:	GenoPop archive

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