Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids. Two main functions: Run_Clustering() that regroups individuals with a same genotype based on proximity and Run_Genotyping() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().
| Version: | 1.1.2 |
| Depends: | R (≥ 3.5.0), shinyBS |
| Imports: | cowplot, doParallel, dplyr, DT, foreach, ggplot2, htmltools, parallel, processx, rlang, Rmixmod, shiny, shinythemes, tidyr |
| Published: | 2024-12-04 |
| DOI: | 10.32614/CRAN.package.GenoTriplo |
| Author: | Julien Roche [aut, cre], Florence Phocas [aut], Mathieu Besson [aut], Pierre Patrice [aut], Marc Vandeputte [aut], François Allal [aut], Pierrick Haffray [aut] |
| Maintainer: | Julien Roche <julien.roche at inrae.fr> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: | no |
| CRAN checks: | GenoTriplo results |
| Reference manual: | GenoTriplo.pdf |
| Package source: | GenoTriplo_1.1.2.tar.gz |
| Windows binaries: | r-devel: GenoTriplo_1.1.2.zip, r-release: GenoTriplo_1.1.2.zip, r-oldrel: GenoTriplo_1.1.2.zip |
| macOS binaries: | r-devel (arm64): GenoTriplo_1.1.2.tgz, r-release (arm64): GenoTriplo_1.1.2.tgz, r-oldrel (arm64): GenoTriplo_1.1.2.tgz, r-devel (x86_64): GenoTriplo_1.1.2.tgz, r-release (x86_64): GenoTriplo_1.1.2.tgz, r-oldrel (x86_64): GenoTriplo_1.1.2.tgz |
| Old sources: | GenoTriplo archive |
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