GxEScanR: Run GWAS/GWEIS Scans Using Binary Dosage Files

Tools to run genome-wide association study (GWAS) and genome-wide by environment interaction study (GWEIS) scans using the genetic data stored in a binary dosage file. The user provides a data frame with the subject's covariate data and the information about the binary dosage file returned by the BinaryDosage::getbdinfo() routine.

Version:	2.0.2
Imports:	Rcpp (≥ 1.0.4), prodlim
LinkingTo:	Rcpp, RcppArmadillo
Suggests:	BinaryDosage, testthat (≥ 2.1.0), covr, knitr, rmarkdown
Published:	2020-10-02
DOI:	10.32614/CRAN.package.GxEScanR
Author:	John Morrison [aut, cre], NCI [fnd] (CA196559), NCI [fnd] (CA201407), NIEHS [fnd] (ES007048), NHLBI [fnd] (HL115606)
Maintainer:	John Morrison <jmorr at usc.edu>
License:	GPL-3
NeedsCompilation:	yes
Language:	en-US
Materials:	NEWS
CRAN checks:	GxEScanR results

Documentation:

Reference manual:	GxEScanR.pdf
Vignettes:	Using GxEScanR (source, R code)

Downloads:

Package source:	GxEScanR_2.0.2.tar.gz
Windows binaries:	r-devel: GxEScanR_2.0.2.zip, r-release: GxEScanR_2.0.2.zip, r-oldrel: GxEScanR_2.0.2.zip
macOS binaries:	r-devel (arm64): GxEScanR_2.0.2.tgz, r-release (arm64): GxEScanR_2.0.2.tgz, r-oldrel (arm64): GxEScanR_2.0.2.tgz, r-devel (x86_64): GxEScanR_2.0.2.tgz, r-release (x86_64): GxEScanR_2.0.2.tgz, r-oldrel (x86_64): GxEScanR_2.0.2.tgz
Old sources:	GxEScanR archive

Linking:

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