HTGM3D: Three Dimensional High Throughput 'GoMiner'
The Gene Ontology (GO) Consortium <https://geneontology.org/> organizes genes
into hierarchical categories based on biological process (BP), molecular function (MF) and
cellular component (CC, i.e., subcellular localization). Tools such as 'GoMiner' (see Zeeberg, B.R.,
Feng, W., Wang, G. et al. (2003) <doi:10.1186/gb-2003-4-4-r28>) can leverage GO to perform
ontological analysis of microarray and proteomics studies, typically generating a list of
significant functional categories. To capture the benefit of all three ontologies,
I developed 'HTGM3D', a three-dimensional version of 'GoMiner'.
| Version: |
1.0 |
| Depends: |
R (≥ 4.2.0) |
| Imports: |
minimalistGODB, GoMiner, HTGM, HTGM2D, grDevices, stats, R2HTML, rgl, vprint, randomGODB, stringr |
| Suggests: |
knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: |
2025-05-30 |
| DOI: |
10.32614/CRAN.package.HTGM3D |
| Author: |
Barry Zeeberg [aut, cre] |
| Maintainer: |
Barry Zeeberg <barryz2013 at gmail.com> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| CRAN checks: |
HTGM3D results |
Documentation:
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