MonoPhy: Explore Monophyly of Taxonomic Groups in a Phylogeny
Requires rooted phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways.
"MonoPhy: a simple R package to find and visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016) <doi:10.7717/peerj-cs.56>.
Version: |
1.3.2 |
Depends: |
ape, phytools |
Imports: |
phangorn, RColorBrewer |
Suggests: |
knitr, testthat, paleotree, rmarkdown, taxize |
Published: |
2024-10-17 |
DOI: |
10.32614/CRAN.package.MonoPhy |
Author: |
Orlando Schwery [aut, cre],
Brian C. O'Meara [aut, ctb],
Peter Cowman [ctb] |
Maintainer: |
Orlando Schwery <schwery.macroevo at pm.me> |
License: |
GPL-3 |
NeedsCompilation: |
no |
Citation: |
MonoPhy citation info |
CRAN checks: |
MonoPhy results |
Documentation:
Downloads:
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