NOVA 0.1.1
CRAN Resubmission Fixes
- Removed all commented code from examples and function bodies
- Fixed DESCRIPTION to spell out Multi-Electrode Array (MEA) without
quotes
- Added newlines at end of all R source files
- Fixed parse errors in documentation examples
Initial CRAN Release
This is the first release of NOVA (Neuroactivity Omics Visualization
and Analysis), a comprehensive toolkit for analyzing and visualizing
Multi-Electrode Array (MEA) data.
Main Features
- Data Processing: Flexible MEA data processing with
automatic structure discovery
discover_mea_structure()
: Automatically detects data
structure
process_mea_flexible()
: Processes MEA data with quality
filtering options
handle_missing_values()
: Multiple strategies for
handling missing data
- Principal Component Analysis:
pca_analysis_enhanced()
: Comprehensive PCA with
visualization
analyze_pca_variable_importance_general()
: Variable
importance analysis
plot_pca_trajectories_general()
: Trajectory
visualization across conditions
- Heatmap Visualization:
create_mea_heatmaps_enhanced()
: Publication-ready
heatmaps with multiple scaling options
- Support for hierarchical clustering and custom annotations
- Utility Functions: Helper functions for data
manipulation, scaling, and color schemes
Documentation
- Comprehensive function documentation with examples
- Vignettes demonstrating typical workflows
- Support for various MEA data formats