PopComm Change Logs
Version 0.1.1 (2025-07-15)
Changes in circle_plot()
- Updated
circle_plot() to support compatibility with
igraph version 2.1.5 and above.
- For
igraph <= 2.1.4, self-loop angles are calculated
manually to radiate outward based on node positions.
- For
igraph >= 2.1.5, loop angles are handled
automatically by igraph; added logic to suppress or delete
self-loops when disabled.
- Added internal version check using
utils::packageVersion() to differentiate logic paths and
ensure backward compatibility.
- Removed direct assignment to
E(g)$loop.angle for new
igraph versions, which now throw errors with incorrect
defaults.
- Added
@importFrom utils packageVersion directive to
support version checking.
- Improved robustness of layout-based self-loop rendering.
Version 0.1.2 (2025-07-29)
Changes
in filter_lr_single(), filter_lr_all(), one_step_single(),
one_step_all()
- Added new parameters:
min_r2 and min_fstat
to filter models by minimum R-squared and F-statistic thresholds.
- Output now includes r_squared (
r2) and f_statistic
(fstat) for each linear regression model.
- Models with R² below
min_r2 or F-statistic below
min_fstat are excluded from results.
- Enhances model screening based on goodness-of-fit and overall
regression significance.
Version 1.0.0 (2025-08-12)
Changes
in filter_lr_single(), filter_lr_all(), score_lr_single(),
single_lr_all(), one_step_single(), one_step_all()
- Added support for average expression matrices. These functions now
accept either Seurat objects or average expression matrices (a numeric
matrix of gene expression where columns encode cell types and samples,
and rows are genes).
- No changes to existing Seurat-based workflows.