We provide an Rcmdr plug-in based on the depthTools package, which implements different robust statistical tools for the description and analysis of gene expression data based on the Modified Band Depth, namely, the scale curves for visualizing the dispersion of one or various groups of samples (e.g. types of tumors), a rank test to decide whether two groups of samples come from a single distribution and two methods of supervised classification techniques, the DS and TAD methods.
| Version: | 1.4 |
| Depends: | Rcmdr (≥ 1.4-0), tcltk, depthTools |
| Published: | 2020-10-16 |
| DOI: | 10.32614/CRAN.package.RcmdrPlugin.depthTools |
| Author: | Sara Lopez-Pintado and Aurora Torrente. |
| Maintainer: | Aurora Torrente <etorrent at est-econ.uc3m.es> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| In views: | Omics |
| CRAN checks: | RcmdrPlugin.depthTools results |
| Reference manual: | RcmdrPlugin.depthTools.pdf |
| Package source: | RcmdrPlugin.depthTools_1.4.tar.gz |
| Windows binaries: | r-devel: RcmdrPlugin.depthTools_1.4.zip, r-release: RcmdrPlugin.depthTools_1.4.zip, r-oldrel: RcmdrPlugin.depthTools_1.4.zip |
| macOS binaries: | r-release (arm64): RcmdrPlugin.depthTools_1.4.tgz, r-oldrel (arm64): RcmdrPlugin.depthTools_1.4.tgz, r-release (x86_64): RcmdrPlugin.depthTools_1.4.tgz, r-oldrel (x86_64): RcmdrPlugin.depthTools_1.4.tgz |
| Old sources: | RcmdrPlugin.depthTools archive |
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