A canonical correlation based framework (SmCCNet) designed for the construction of phenotype-specific multi-omics networks. This framework adeptly integrates single or multiple omics data types along with a quantitative or binary phenotype of interest. It offers a streamlined setup process that can be tailored manually or configured automatically, ensuring a flexible and user-friendly experience.
| Version: | 2.0.3 |
| Depends: | R (≥ 3.5) |
| Imports: | EnvStats, future, pROC, spls, Matrix, pbapply, igraph, magrittr, rlist, furrr, purrr, pracma |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), dplyr, reshape2, shadowtext, tidyverse, parallel, mltools, caret |
| Published: | 2024-04-16 |
| DOI: | 10.32614/CRAN.package.SmCCNet |
| Author: | Weixuan Liu [aut, cre], Yonghua Zhuang [aut, cre], W. Jenny Shi [aut, cre], Thao Vu [aut], Iain Konigsberg [aut], Katherine Pratte [aut], Laura Saba [aut], Katerina Kechris [aut] |
| Maintainer: | Weixuan Liu <weixuan.liu at cuanschutz.edu> |
| License: | GPL-3 |
| URL: | https://github.com/KechrisLab/SmCCNet, https://kechrislab.github.io/SmCCNet/, https://liux4283.github.io/SmCCNet/ |
| NeedsCompilation: | no |
| Materials: | NEWS |
| In views: | Omics |
| CRAN checks: | SmCCNet results |
| Reference manual: | SmCCNet.pdf |
| Vignettes: |
Automated SmCCNet Reconstructing phenotype-specific multi-omics networks with SmCCNet Reconstructing Phenotype-Specific Single-Omics Networks with SmCCNet |
| Package source: | SmCCNet_2.0.3.tar.gz |
| Windows binaries: | r-devel: SmCCNet_2.0.3.zip, r-release: SmCCNet_2.0.3.zip, r-oldrel: SmCCNet_2.0.3.zip |
| macOS binaries: | r-release (arm64): SmCCNet_2.0.3.tgz, r-oldrel (arm64): SmCCNet_2.0.3.tgz, r-release (x86_64): SmCCNet_2.0.3.tgz, r-oldrel (x86_64): SmCCNet_2.0.3.tgz |
| Old sources: | SmCCNet archive |
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