UKBAnalytica: UK Biobank Data Processing and Survival Analysis Toolkit
Provides an integrated workflow for UK Biobank Research
Analysis Platform (RAP) hosted and RAP-generated analysis tables. The
package supports RAP phenotype extraction planning, predefined variable
sets and disease definitions, standardized baseline preprocessing,
multi-source endpoint ascertainment, prevalent and incident case
classification, survival-ready cohort construction, regression, multiple
imputation, propensity score analysis, mediation analysis, subgroup and
sensitivity analyses, machine learning, proteomics enrichment and
protein-protein interaction analysis, and publication-oriented
visualization. The package workflow is described in He et al. (2026)
<doi:10.64898/2026.06.19.26356057>.
| Version: |
1.0.0 |
| Depends: |
R (≥ 4.0) |
| Imports: |
data.table, stringi, ggplot2, rlang, scales, survival, pROC, tableone, mice, mitools, sandwich, lmtest, MASS, mgcv, xml2, igraph |
| Suggests: |
testthat, rms, gbm, cobalt, survminer, MatchIt, regmedint, ranger, xgboost, glmnet, e1071, nnet, rpart, Boruta, rBayesianOptimization, randomForestSRC, clusterProfiler, AnnotationDbi, org.Hs.eg.db, qs2 |
| Published: |
2026-06-30 |
| DOI: |
10.32614/CRAN.package.UKBAnalytica (may not be active yet) |
| Author: |
Nan He  [aut, cre] |
| Maintainer: |
Nan He <hinna01 at 163.com> |
| BugReports: |
https://github.com/Hinna0818/UKBAnalytica/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/Hinna0818/UKBAnalytica,
https://hinna0818.github.io/UKBAnalytica/ |
| NeedsCompilation: |
no |
| Materials: |
NEWS |
| CRAN checks: |
UKBAnalytica results |
Documentation:
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