charisma 1.0.0

Initial CRAN Release

First public release of charisma - an R package for reproducible color characterization of digital images for biological studies (and other things).

Features

• Automatic Color Classification: Classify image colors into one of 10 discrete, biologically-inspired categories (black, blue, brown, green, grey, orange, purple, red, white, yellow)

• CLUT System: Color Look-Up Table (CLUT) with scientifically-defined HSV boundaries for each color category, validated across 3.6+ million color coordinates

• Main Functions:

  • charisma(): Main color classification pipeline with automatic thresholding
  • charisma2(): Rewind and edit saved charisma objects without re-running full pipeline
  • color2label(): Convert individual RGB/HSV colors to discrete labels
  • validate(): Validate CLUT completeness across color space

• Integration:

  • Leverages recolorize for image preprocessing and color segmentation
  • Optional pavo integration for color pattern geometry analysis
  • Supports both interactive and automated workflows

• Reproducibility:

  • Complete state tracking with merge/replacement history
  • Save and reload analyses with full provenance
  • Deterministic color classification for cross-study comparisons

• Visualization:

  • Plot methods for charisma objects
  • Mosaic plots showing color proportions
  • Color masks and classification overlays

Documentation

• Comprehensive vignette with step-by-step tutorial
• Example data from bird (Tangara fastuosa)
• Tips for museum specimens and automated workflows
• pkgdown website with full documentation

Testing

• Unit tests covering main functions
• Example workflows validated against published results
• CLUT validation across full HSV color space

mirror server hosted at Truenetwork, Russian Federation.