craftgrn 0.1.6
- Revised DESCRIPTION references to avoid CRAN incoming spell-check
notes and replaced the arXiv URL reference with the requested arXiv DOI
format.
craftgrn 0.1.5
- Addressed CRAN resubmission feedback by adding method references to
DESCRIPTION, completing value documentation, replacing
\dontrun{} examples, avoiding default writes to the working
directory, and removing a fixed seed from package function code.
craftgrn 0.1.4
- Added production-oriented Module 3 APIs for regulatory topic
modeling:
run_topic_modeling(),
module3_construct_docs(),
module3_train_topic_models(),
module3_extract_topics(), and
build_module3_qc_report().
- Added reusable Module 3 topic-input caches and compact pass-only
topic-link output as the default production behavior.
- Added
visualize_topic_modeling_results() and
visualize_differential_grns() for standard Module 3 result
browsers.
craftgrn 0.1.3
- Fixed Windows incoming pretest failures by normalizing path
comparisons in report tests and hardening temporary topic-model fixture
directory creation.
- Revised CRAN-facing package metadata wording to reduce incoming
spell-check notes for abbreviated scientific terms.
craftgrn 0.1.2
- Initial CRAN submission candidate.
- Added Module 1 TFBS prediction, Module 2 TF-target prediction, and
Module 3 regulatory topic modeling workflows.
- Added package-native QC reports and pkgdown documentation.