dPCP: Automated Analysis of Multiplex Digital PCR Data

The automated clustering and quantification of the digital PCR data is based on the combination of 'DBSCAN' (Hahsler et al. (2019) <doi:10.18637/jss.v091.i01>) and 'c-means' (Bezdek et al. (1981) <doi:10.1007/978-1-4757-0450-1>) algorithms. The analysis is independent of multiplexing geometry, dPCR system, and input amount. The details about input data and parameters are available in the vignette.

Version:	2.0.1
Depends:	R (≥ 4.0.0)
Imports:	cluster, dbscan, e1071, exactci, ggplot2, ggpubr, graphics, raster, rlist, scales, shiny, shinyjs, stats, stringr, utils
Suggests:	knitr, rmarkdown, testthat
Published:	2023-08-12
DOI:	10.32614/CRAN.package.dPCP
Author:	Alfonso De Falco [aut, cre], Michel Mittelbronn [ctb], Christophe Olinger [ctb], Daniel Stieber [ctb], Laboratoire national de santé [cph]
Maintainer:	Alfonso De Falco <alfonsodefalco90 at gmail.com>
BugReports:	https://github.com/alfodefalco/dPCP/issues
License:	MIT + file LICENSE
URL:	https://github.com/alfodefalco/dPCP
NeedsCompilation:	no
Citation:	dPCP citation info
CRAN checks:	dPCP results

Documentation:

Reference manual:	dPCP.pdf
Vignettes:	Digital PCR Cluster Predictor: a Universal Tool for the Automated Analysis of Multiplex Digital PCR Data

Downloads:

Package source:	dPCP_2.0.1.tar.gz
Windows binaries:	r-devel: dPCP_2.0.1.zip, r-release: dPCP_2.0.1.zip, r-oldrel: dPCP_2.0.1.zip
macOS binaries:	r-devel (arm64): dPCP_2.0.1.tgz, r-release (arm64): dPCP_2.0.1.tgz, r-oldrel (arm64): dPCP_2.0.1.tgz, r-devel (x86_64): dPCP_2.0.1.tgz, r-release (x86_64): dPCP_2.0.1.tgz, r-oldrel (x86_64): dPCP_2.0.1.tgz
Old sources:	dPCP archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=dPCP to link to this page.