driveR 0.4.1
Minor changes and bug fixes
- fixed a CRAN error due to a package documentation issue (#7)
driveR 0.4.0
Major Changes
driveR 0.3.0
Major Changes
- Updated the cancer-type-specific thresholds
Minor changes and bug fixes
- Updated citation to the method’s article where necessary
driveR 0.2.1
Major Changes
- Updated the MTL model after fixing the issue below
- Fixed issue in
MCR_table. The coordinates were
converted to hg19 (from hg18)
Minor changes and bug fixes
- Made use of
caret::predict.train explicit
- Removed ‘Homo.sapiens’ from Imports field (not used)
driveR 0.2.0
Major Changes
- Fixed an issue in
create_SCNA_score_df() where the SCNA
score was not calculated because the column name for
“MCR_overlap_percent” was incorrectly assigned as
“transcript_overlap_percent”
- Updated the MTL classification model
TCGA_MTL_fit and
specific_thresholds after fixing the issue above
Minor changes and bug fixes
- Updated citation information, correcting author name
- Minor changes in utility functions
- Added the
na.string argument to
create_noncoding_impact_score_df(),
predict_coding_impact() and
create_features_df() as the string that was used to
indicate when a score is not available during annotation with ANNOVAR
(default = “.”)
- Generalized
determine_hotspot_genes() to able to use
occurrence annotations from different versions of COSMIC
- Updated all data
driver 0.1.1
Initial release