eCV: Enhanced Coefficient of Variation and IDR Extensions for Reproducibility Assessment

Reproducibility assessment is essential in extracting reliable scientific insights from high-throughput experiments. While the Irreproducibility Discovery Rate (IDR) method has been instrumental in assessing reproducibility, its standard implementation is constrained to handling only two replicates. Package 'eCV' introduces an enhanced Coefficient of Variation (eCV) metric to assess the likelihood of omic features being reproducible. Additionally, it offers alternatives to the Irreproducible Discovery Rate (IDR) calculations for multi-replicate experiments. These tools are valuable for analyzing high-throughput data in genomics and other omics fields. The methods implemented in 'eCV' are described in Gonzalez-Reymundez et al., (2023) <doi:10.1101/2023.12.18.572208>.

Version:	0.0.2
Depends:	R (≥ 3.5.0), idr (≥ 1.3), mvtnorm (≥ 1.1.3), future (≥ 1.4.0), future.apply (≥ 1.9.0)
Imports:	stats, utils
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0), tidyverse
Published:	2024-01-19
DOI:	10.32614/CRAN.package.eCV
Author:	Agustin Gonzalez-Reymundez [aut, cre]
Maintainer:	Agustin Gonzalez-Reymundez <agustin.gonrey at eclipsebio.com>
BugReports:	https://github.com/eclipsebio/eCV/issues
License:	GPL (≥ 3)
URL:	https://github.com/eclipsebio/eCV
NeedsCompilation:	no
Language:	en-US
Materials:	README NEWS
CRAN checks:	eCV results

Documentation:

Reference manual:	eCV.pdf
Vignettes:	Introduction to the eCV package

Downloads:

Package source:	eCV_0.0.2.tar.gz
Windows binaries:	r-devel: eCV_0.0.2.zip, r-release: eCV_0.0.2.zip, r-oldrel: eCV_0.0.2.zip
macOS binaries:	r-release (arm64): eCV_0.0.2.tgz, r-oldrel (arm64): eCV_0.0.2.tgz, r-release (x86_64): eCV_0.0.2.tgz, r-oldrel (x86_64): eCV_0.0.2.tgz
Old sources:	eCV archive

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