Implements fast, scalable optimization algorithms for fitting generalized principal components analysis (GLM-PCA) models, as described in "A Generalization of Principal Components Analysis to the Exponential Family" Collins M, Dasgupta S, Schapire RE (2002, ISBN:9780262271738), and subsequently "Feature Selection and Dimension Reduction for Single-Cell RNA-Seq Based on a Multinomial Model" Townes FW, Hicks SC, Aryee MJ, Irizarry RA (2019) <doi:10.1186/s13059-019-1861-6>.
Version: | 0.1-108 |
Depends: | R (≥ 3.6) |
Imports: | utils, Matrix, stats, distr, daarem, Rcpp (≥ 1.0.8), RcppParallel (≥ 5.1.5) |
LinkingTo: | Rcpp, RcppArmadillo, RcppParallel |
Suggests: | testthat, knitr, rmarkdown, ggplot2, cowplot |
Published: | 2025-03-13 |
DOI: | 10.32614/CRAN.package.fastglmpca |
Author: | Eric Weine [aut, cre], Peter Carbonetto [aut], Matthew Stephens [aut] |
Maintainer: | Eric Weine <ericweine15 at gmail.com> |
BugReports: | https://github.com/stephenslab/fastglmpca/issues |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
URL: | https://github.com/stephenslab/fastglmpca |
NeedsCompilation: | yes |
SystemRequirements: | GNU make |
Materials: | NEWS |
CRAN checks: | fastglmpca results |
Reference manual: | fastglmpca.pdf |
Vignettes: |
Analysis of single-cell RNA-seq data using fastglmpca (source, R code) |
Package source: | fastglmpca_0.1-108.tar.gz |
Windows binaries: | r-devel: fastglmpca_0.1-108.zip, r-release: fastglmpca_0.1-108.zip, r-oldrel: fastglmpca_0.1-108.zip |
macOS binaries: | r-devel (arm64): fastglmpca_0.1-108.tgz, r-release (arm64): fastglmpca_0.1-108.tgz, r-oldrel (arm64): fastglmpca_0.1-108.tgz, r-devel (x86_64): fastglmpca_0.1-108.tgz, r-release (x86_64): fastglmpca_0.1-108.tgz, r-oldrel (x86_64): fastglmpca_0.1-108.tgz |
Old sources: | fastglmpca archive |
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