freqpcr: Estimates Allele Frequency on qPCR DeltaDeltaCq from Bulk Samples
Interval estimation of the population allele frequency from qPCR analysis based on the restriction enzyme digestion (RED)-DeltaDeltaCq method (Osakabe et al. 2017, <doi:10.1016/j.pestbp.2017.04.003>), as well as general DeltaDeltaCq analysis. Compatible with the Cq measurement of DNA extracted from multiple individuals at once, so called "group-testing", this model assumes that the quantity of DNA extracted from an individual organism follows a gamma distribution. Therefore, the point estimate is robust regarding the uncertainty of the DNA yield.
| Version: | 0.4.0 |
| Depends: | R (≥ 3.6), cubature |
| Imports: | methods |
| Suggests: | knitr, rmarkdown, remotes |
| Published: | 2022-01-27 |
| DOI: | 10.32614/CRAN.package.freqpcr |
| Author: | Masaaki Sudo 
[aut, cre] |
| Maintainer: | Masaaki Sudo <masaaki at sudori.info> |
| License: | GPL (≥ 3) |
| URL: | https://github.com/sudoms/freqpcr |
| NeedsCompilation: | no |
| Citation: | freqpcr citation info |
| Materials: | README NEWS |
| CRAN checks: | freqpcr results |
Documentation:
| Reference manual: | freqpcr.pdf |
| Vignettes: |
Introducing freqpcr |
Downloads:
| Package source: | freqpcr_0.4.0.tar.gz |
| Windows binaries: | r-devel: freqpcr_0.4.0.zip, r-release: freqpcr_0.4.0.zip, r-oldrel: freqpcr_0.4.0.zip |
| macOS binaries: | r-release (arm64): freqpcr_0.4.0.tgz, r-oldrel (arm64): freqpcr_0.4.0.tgz, r-release (x86_64): freqpcr_0.4.0.tgz, r-oldrel (x86_64): freqpcr_0.4.0.tgz |
Linking:
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