genevintage: Detect Annotation Releases and Repair Gene Names
Detects the species and the 'Ensembl' <https://www.ensembl.org>
or 'GENCODE' <https://www.gencodegenes.org> annotation release associated
with a set of gene or transcript identifiers by scoring them against
a bundled fingerprint of each release. Identifiers are then converted to
gene names using the matching release. Gene symbols that spreadsheet software
turned into dates or numbers ('SEPT9' to '9-Sep') are restored to the
spelling of the chosen release. Also retrieves genes by class (mitochondrial,
sex-linked, protein-coding, ribosomal, transfer RNA, long non-coding
RNA), exon-union gene lengths, 'Entrez' cross-references, and orthologs
in another species from 'Ensembl Compara'.
| Version: |
0.1.3 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
stats, tools, utils |
| Suggests: |
curl, Matrix, knitr, methods, rmarkdown, spelling, testthat (≥ 3.0.0), withr |
| Published: |
2026-10-20 |
| DOI: |
10.32614/CRAN.package.genevintage (may not be active yet) |
| Author: |
Saket Choudhary 
[aut, cre] |
| Maintainer: |
Saket Choudhary <saketc at iitb.ac.in> |
| BugReports: |
https://github.com/saketlab/genevintage/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://genevintage.saketlab.org/R/,
https://github.com/saketlab/genevintage |
| NeedsCompilation: |
no |
| Language: |
en-US |
| Materials: |
README, NEWS |
| CRAN checks: |
genevintage results |
Documentation:
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