gleam 0.8.0

New Features

• Full pipeline function run_gleam() integrating all modules end-to-end, supporting both cohort-input and pre-computed herd-structure workflows.
• Complete modular API: run_demographic_herd_module(), run_weights_module(), run_ration_quality_module(), run_metabolic_energy_req_module(), run_nitrogen_balance_module(), run_emissions_enteric_module(), run_emissions_manure_module(), run_emissions_ration_module(), run_production_module(), run_allocation_module(), run_aggregation_module().
• Support for AR5 and AR6 global warming potential sets in run_aggregation_module().
• Bundled example datasets in inst/extdata/ for all modules and the full pipeline.
• Four vignettes covering package overview, module descriptions, ecosystem context, and GLEAM history.

Improvements

• Switched vignette math rendering to KaTeX for improved portability.
• Improved code readability and variable naming consistency across all modules.
• Corrected cohort-level result assignment in the aggregation module (gleam_chrt_data was incorrectly written to gleam_hrd_data).
• Updated data.table minimum version requirement to >= 1.16.0.
• Migrated repository to un-fao GitHub organisation; updated all URLs in DESCRIPTION and documentation.

Bug Fixes

• Fixed chicken cohort documentation duplication.
• Fixed co2_feed_crop_operations variable name alignment across modules.
• Fixed offtake_number returning NA in edge cases.

Infrastructure

• Added GitHub Actions workflow for R CMD check on Windows and Ubuntu.
• Added lintr configuration and CI linting step.
• Added testthat (edition 3) test suite covering all modules and the full pipeline.
• Added _pkgdown.yml for pkgdown website generation.

gleam 0.7.x (development)

Initial development iterations establishing the core herd module, basic unit tests, and package infrastructure. See the git history for detailed commit-level changes.

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