methFuse 1.1.0 (2026-02-19)
New features
- Renamed package to methFuse to avoid name conflict in CRAN
fuseR 1.1.0 (2026-02-06)
New features
- Added
fuse.cluster() support for BSseq and
methrix objects
- Added
fuse.segment() support for BSseq and
methrix objects
- Unified S3 API:
fuse.cluster(K0, K1) and
fuse.segment(K0, K1) now supported
fuse.cluster() now returns an hclust
object
Improvements
- Improved internal argument normalization for matrix inputs
- Expanded test coverage for Bioconductor classes
Bug fixes
- Fixed incorrect handling of positional
K1 arguments in
S3 methods
- Fixed bug in plotting
- Now works in Windows OS
fuseR 1.0.0 (2025-12-15)
New features
- Added
plot.fuse_summary() S3 method for visualization
of FUSE segmentation results.
- Segment plots now display:
- Horizontal segment-level methylation estimates
- Per-segment average beta values
- Optional per-CpG methylation values overlaid as background
points
- Added support for flexible segment selection when plotting
(
segments_to_plot).
Improvements
- Promoted package to first stable release (
1.0.0).
- Improved input validation and error handling across exported
functions.
- Improved S3 method registration and namespace imports.
- Improved vignette robustness and reproducibility during package
checks.
- Updated documentation to reflect current plotting and summary
capabilities.
Bug fixes
- Fixed S3 dispatch issues affecting
plot() during
vignette building.
- Fixed lazy-load and installation issues caused by partial
rebuilds.
- Fixed edge cases in beta computation when counts sum to zero.
- Fixed the swapped TRUE/FALSE labels for coherent segments in
fuse.summary().
fuseR 0.0.0.9000 (2025-11-20)
Initial development release
- Implemented core FUSE pipeline:
fuse.cluster()number.of.clusters()fuse.cut.tree()fuse.summary()fuse.segment() (full pipeline wrapper)
- Included basic example data files for testing.
- Added introductory README and MIT license.
- Added full example workflow as an R Markdown vignette
(
example.Rmd).
- Enabled automatic pkgdown site deployment via GitHub Actions.