Add more flexible replacement of ETA and other values #188
Add ability to use nonmem2rx with a NONMEM control
stream text input
Be more forgiving in the validation and remove IDs without
observations when solving the IPRED problem.
Binary linkage to dparser changed to structure only, meaning
nonmem2rx may not have to be updated if
dparser is updated.
When reading NONMEM results from xml will try nm:
prefixed tags and non-nm: prefixed tags.
Omega and Sigma prior estimates are currently ignored (theta priors were already ignored)
Improve reading in theta values from the
xml
Read all NONMEM files using latin1 encoding to allow single byte parser to work
When lines in the NONMEM input dataset start with #
they are now ignored.
When all IDs are zero, NONMEM assumes restarting time gives different IDs; this is now reflected in NONMEM translation of IDs.
With linCmt() parsing, expand the scope of
conflicting parameters that will be renamed with an import.
Added better parsing for ELSE where there is another
IF on the next line.
Prefixed conflicting VP with rxm. when
linCmt() models to be more accommodating when importing
linear compartment models.
Added explicit requirement for rxode2 2.0.13
Added support of DADT(#) statements on the right
side of the equation, i.e. DADT(3) = DADT(1) + DADT(2)
(#164)
Added support of ADVAN#, TRANS# (#161)
Added more NONMEM-specific solving options
Fixed security related format issues as requested by CRAN #167
Now omega, thetaMat, dfObs
and dfSub are incorporated into model function (by
default). You can change this with the nonmem2rx
keep argument
Using the rxode2 2.0.13 makes sure that the solves
for models where the endpoint is not determined in the typical
nlmixr2 style will validate more often (due to a bug in
solving in rxode2).
Added support for ADVAN5 and ADVAN7
models
Add parsing of accept/ignore characters for example
IGNORE=(C='C') (See Issue #140)
Add more robust reading of NONMEM information (and add source) in
nminfo() (See issue #142)
Since NONMEM does not protect divide by zeros by default, the
default for solveZero is changed to
solveZero = TRUE for nonmem2rx
objects.
Fixed bug for renaming eta and theta
when they are renamed so that the ui$iniDf does not match
the theta# or eta# (Issue #153)
Turned off testing of the as.nonmem2rx example since
it took too much time (according to CRAN)
LTO, valgrind
etc)NEWS.md file to track changes to the
package.