optrcdmaeAT: Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments

Computes A-, MV-, D- and E-optimal or near-optimal row-column designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all pairwise treatment contrasts. The algorithms used in this package are based on the array exchange and treatment exchange algorithms adopted from Debusho, Gemechu and Haines (2018) <doi:10.1080/03610918.2018.1429617> algorithms after adjusting for the row-column designs setup. The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.

Version:	1.0.1
Depends:	R (≥ 3.3.2), MASS, Matrix, igraph, tcltk
Published:	2025-05-25
DOI:	10.32614/CRAN.package.optrcdmaeAT
Author:	Dibaba Bayisa Gemechu [aut, cre], Legesse Kassa Debusho [aut], Linda Haines [aut]
Maintainer:	Dibaba Bayisa Gemechu <diboobayu at gmail.com>
License:	GPL-2
NeedsCompilation:	no
In views:	ExperimentalDesign
CRAN checks:	optrcdmaeAT results

Documentation:

Reference manual:

optrcdmaeAT.pdf

Downloads:

Package source:	optrcdmaeAT_1.0.1.tar.gz
Windows binaries:	r-devel: optrcdmaeAT_1.0.1.zip, r-release: optrcdmaeAT_1.0.1.zip, r-oldrel: optrcdmaeAT_1.0.1.zip
macOS binaries:	r-release (arm64): optrcdmaeAT_1.0.1.tgz, r-oldrel (arm64): optrcdmaeAT_1.0.1.tgz, r-release (x86_64): optrcdmaeAT_1.0.1.tgz, r-oldrel (x86_64): optrcdmaeAT_1.0.1.tgz
Old sources:	optrcdmaeAT archive

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