plantmix: Genetic Study of Plant Mixtures
Fit linear mixed models dedicated to the genetic study of plant mixtures, such as those based on general and specific mixing abilities (GMA-SMA) as well as direct and social breeding values (DBV-SBV), also known as direct and indirect genetic effects (DGE-IGE). More details in Forst et al (2019, <doi:10.1016/j.fcr.2019.107571>) for GMA-SMA models, and Salomon et al (2026, <doi:10.64898/2026.03.27.714849>) for DBV-SBV models. The package also provides functions to optimize experimental designs, simulate data sets and compute interaction indices.
| Version: | 1.0.2 |
| Depends: | R (≥ 4.0.0), ggplot2, lme4 |
| Imports: | graphics, igraph, MASS, Matrix, methods, Rcpp (≥ 1.0.13), stats, TMB (≥ 1.9.17), utils |
| LinkingTo: | TMB, Rcpp, RcppEigen |
| Suggests: | breedR, INLA, emmeans, knitr, MM4LMM, rmarkdown, testthat |
| Published: | 2026-06-09 |
| DOI: | 10.32614/CRAN.package.plantmix (may not be active yet) |
| Author: | Timothee Flutre 
[aut, ctb, cre],
INRAE [cph, fnd],
Jerome Enjalbert
[ctb],
Emma Forst [ctb],
Maxence Remerand
[ctb],
Jemay Salomon
[ctb] |
| Maintainer: | Timothee Flutre <timothee.flutre at inrae.fr> |
| License: | AGPL-3 |
| Copyright: | INRAE |
| NeedsCompilation: | yes |
| Additional_repositories: | https://famuvie.github.io/breedR, https://inla.r-inla-download.org/R/stable |
| Citation: | plantmix citation info |
| Materials: | README, NEWS |
| CRAN checks: | plantmix results |
Documentation:
Downloads:
| Package source: | plantmix_1.0.2.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
Linking:
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