Provides a set of tools to perform quantitative trait locus (QTL) analysis in experimental crosses. It is a reimplementation of the 'R/qtl' package to better handle high-dimensional data and complex cross designs. Broman et al. (2019) <doi:10.1534/genetics.118.301595>.
Version: | 0.36 |
Depends: | R (≥ 3.1.0) |
Imports: | Rcpp (≥ 1.0.7), yaml (≥ 2.1.13), jsonlite (≥ 0.9.17), data.table (≥ 1.10.4-3), parallel, stats, utils, graphics, grDevices, RSQLite |
LinkingTo: | Rcpp, RcppEigen |
Suggests: | testthat, devtools, roxygen2, vdiffr, qtl |
Published: | 2024-05-13 |
DOI: | 10.32614/CRAN.package.qtl2 |
Author: | Karl W Broman [aut, cre], R Core Team [ctb] |
Maintainer: | Karl W Broman <broman at wisc.edu> |
BugReports: | https://github.com/rqtl/qtl2/issues |
License: | GPL-3 |
Copyright: | Code for Brent's method for univariate function optimization was taken from R 3.2.2 (Copyright 1995, 1996 Robert Gentleman and Ross Ihaka, Copyright 2003-2004 The R Foundation, Copyright 1998-2014 The R Core Team). |
URL: | https://kbroman.org/qtl2/, https://github.com/rqtl/qtl2 |
NeedsCompilation: | yes |
Citation: | qtl2 citation info |
Materials: | README NEWS |
CRAN checks: | qtl2 results |
Reference manual: | qtl2.pdf |
Package source: | qtl2_0.36.tar.gz |
Windows binaries: | r-devel: qtl2_0.36.zip, r-release: qtl2_0.36.zip, r-oldrel: qtl2_0.36.zip |
macOS binaries: | r-release (arm64): qtl2_0.36.tgz, r-oldrel (arm64): qtl2_0.36.tgz, r-release (x86_64): qtl2_0.36.tgz, r-oldrel (x86_64): qtl2_0.36.tgz |
Old sources: | qtl2 archive |
Reverse imports: | cape, qtl2convert, qtl2fst, qtl2ggplot, qtl2pattern |
Reverse suggests: | mmconvert, qtl2pleio |
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