calculate_metrics which will
make calls to the “calculate” family of quicR functions, and return a
dataframe of all the metrics passed to the function.plot_metrics function which accepts the
output of the calculate_metrics function and returns a
faceted plot of the calculated metrics.get_meta so that the second
column doesn’t have a leading white space.get_wells. This wasn’t
necessarily a bug, but was not ideal and the messages didn’t provide any
relevant information about what the function was doing.get_wells which caused the function to
assigning a data frame as a variable instead of returning the data
frame.calculate_threshold function for
calculating detection thresholds using a common method done in the
literature.sep argument to
get_sample_locations for delimiting sample IDs and dilution
factors.calculate_MS function to a vectorized
function, and instead of using lm, the function looks at
differences within the moving window. This provides a much faster
calculation, but does reduce the accuracy slightly. May provide the
option to do either methods in the future.tab_name in
the get_sample_locations function.Added a new function “transpose_real.R” which takes the output of “get_real.R” and transposes it. This format makes it such that each read is a column labelled with the time of the read.
Removed the transposition sub-function from “normalize_RFU.R” to be its own separate function.
Updated example scripts to incorporate the new transposition function.