rabhit: Inference Tool for Antibody Haplotype
Infers V-D-J (Variable-Diversity-Joining) haplotypes and gene
deletions from AIRR-seq (Adaptive Immune Receptor Repertoire sequencing)
data for Ig (Immunoglobulin) and TR (T cell Receptor) chains, based on J
(Joining), D (Diversity), or V (Variable) genes as anchor, by adapting a
Bayesian framework.
It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene.
Citation:
Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>.
Peres and Gidoni, et al (2019) <doi:10.1093/bioinformatics/btz481>.
| Version: |
0.4.0 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
ggplot2 (≥ 3.2.0), dplyr (≥ 1.0.0), tidyr (≥ 1.0.0), cowplot (≥ 0.9.1), gtable (≥ 0.3.0), grid, stats, utils, graphics, grDevices |
| Suggests: |
knitr, rmarkdown, plotly (≥ 4.7.1), htmlwidgets (≥ 1.3.0), ggdendro (≥ 0.1.20), piglet, testthat (≥ 3.0.0) |
| Published: |
2026-07-24 |
| DOI: |
10.32614/CRAN.package.rabhit |
| Author: |
Ayelet Peres [aut, cre],
Moriah Gidoni [aut],
Gur Yaari [aut, cph] |
| Maintainer: |
Ayelet Peres <ayelet.peres at yale.edu> |
| BugReports: |
https://github.com/ayeletperes/rabhit/issues |
| License: |
CC BY-SA 4.0 |
| URL: |
https://github.com/ayeletperes/rabhit,
https://ayeletperes.github.io/rabhit/ |
| NeedsCompilation: |
no |
| Citation: |
rabhit citation info |
| Materials: |
README, NEWS |
| CRAN checks: |
rabhit results |
Documentation:
Downloads:
Linking:
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