serocalculator: Estimating Infection Rates from Serological Data

Translates antibody levels measured in cross-sectional population samples into estimates of the frequency with which seroconversions (infections) occur in the sampled populations. Replaces the previous 'seroincidence' package.

Version: 1.4.1
Depends: R (≥ 4.1.0)
Imports: cli, doParallel, dplyr, foreach, ggplot2, patchwork, lifecycle, magrittr, Rcpp, rlang, rngtools, scales, stats, tibble, tidyr, tidyselect, utils, purrr, and, glue, stringr, parallel, labelled
LinkingTo: Rcpp
Suggests: bookdown, DT, fs, ggbeeswarm, knitr, mixtools, pak, quarto, rmarkdown, spelling, ssdtools (≥ 1.0.6.9016), testthat (≥ 3.0.0), tidyverse, qrcode, vdiffr, withr, forcats, rex, readr
Published: 2026-03-25
DOI: 10.32614/CRAN.package.serocalculator
Author: Kristina Lai [aut, cre], Chris Orwa [aut], Kwan Ho Lee [ctb], Peter Teunis [aut, cph] (Author of the method and original code.), Kristen Aiemjoy [aut], Douglas Ezra Morrison [aut]
Maintainer: Kristina Lai <kwlai at ucdavis.edu>
BugReports: https://github.com/UCD-SERG/serocalculator/issues
License: GPL-3
URL: https://ucd-serg.github.io/serocalculator/, https://github.com/UCD-SERG/serocalculator
NeedsCompilation: yes
Language: en-US
Materials: README, NEWS
CRAN checks: serocalculator results

Documentation:

Reference manual: serocalculator.html , serocalculator.pdf

Downloads:

Package source: serocalculator_1.4.1.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available
Old sources: serocalculator archive

Linking:

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