###
### Mon Jun 7 08:37:45 EST 2004:
### /usr/pkg/bin/bmake bulk-package for mummer-3.04
### Current pkg count: 4 installed packages: digest-20021220 hmmer-2.3.1 patch-2.5.4nb2 xpkgwedge-1.10
###
BULK> Full rebuild in progress...
BULK> Cleaning package and its depends
===> Cleaning for mummer-3.04
===> Cleaning for perl-5.8.4
===> Cleaning for patch-2.5.4nb2
===> Cleaning for gmake-3.80nb3
===> Cleaning for pkg_install-info-4.5nb2
===> Cleaning for gettext-lib-0.11.5nb3
===> Cleaning for libiconv-1.9.1nb2
===> Cleaning for libtool-base-1.5.6nb1
BULK> Removing installed packages which are not needed to build mummer-3.04
BULK> Keeping BULK_PREREQ: digest-20021220 (pkgtools/digest)
BULK> mummer-3.04 requires installed package patch-2.5.4nb2 (devel/patch) to build.
/usr/pkg/sbin/pkg_delete -K /var/db/pkg -r hmmer-2.3.1
/usr/pkg/sbin/pkg_delete -K /var/db/pkg -r xpkgwedge-1.10
pkg_delete: package 'xpkgwedge-1.10' doesn't have a prefix
pkg_delete: package 'xpkgwedge-1.10' doesn't have a prefix
BULK> Installing packages which are required to build mummer-3.04.
BULK> /usr/pkg/sbin/pkg_add -K /var/db/pkg /packages/SunOS/5.9/sparc/All/perl-5.8.4.tgz
===========================================================================
$NetBSD: MESSAGE,v 1.1 2004/01/08 19:18:00 jlam Exp $
perl-5.8.4 will use the following directory as the default
location of the site-specific Perl modules:
/usr/pkg/lib/perl5/site_perl/5.8.4
===========================================================================
BULK> Required package patch-2.5.4nb2 (devel/patch) is already installed
BULK> /usr/pkg/sbin/pkg_add -K /var/db/pkg /packages/SunOS/5.9/sparc/All/gmake-3.80nb3.tgz
===> Installing configuration/support files for libiconv-1.9.1nb2
/usr/pkg/lib/charset.alias
BULK> Required package pkg_install-info-4.5nb2 (pkgtools/pkg_install-info) is already installed
BULK> Required package gettext-lib-0.11.5nb3 (devel/gettext-lib) is already installed
BULK> Required package libiconv-1.9.1nb2 (converters/libiconv) is already installed
BULK> /usr/pkg/sbin/pkg_add -K /var/db/pkg /packages/SunOS/5.9/sparc/All/libtool-base-1.5.6nb1.tgz
BULK> Required package digest-20021220 (pkgtools/digest) is already installed
/usr/pkg/bin/bmake package (mummer-3.04)
===> Checking for vulnerabilities in mummer-3.04
=> Checksum OK for MUMmer3.04.tar.gz.
work -> /work/pkgbuild/biology/mummer/work
===> Extracting for mummer-3.04
===> Required installed package {perl>=5.0,perl-thread>=5.0}: perl-5.8.4 found
===> Required installed package gmake>=3.78: gmake-3.80nb3 found
===> Required installed package patch>=2.2: patch-2.5.4nb2 found
===> Patching for mummer-3.04
===> Applying pkgsrc patches for mummer-3.04
===> Overriding tools for mummer-3.04
===> Buildlinking for mummer-3.04
===> Configuring for mummer-3.04
===> Building for mummer-3.04
cd /work/pkgbuild/biology/mummer/work/MUMmer3.04/src/kurtz; /usr/pkg/bin/gmake mummer
gmake[1]: Entering directory `/work/pkgbuild/biology/mummer/work/MUMmer3.04/src/kurtz'
cd libbasedir; /usr/pkg/bin/gmake libbase.a
gmake[2]: Entering directory `/work/pkgbuild/biology/mummer/work/MUMmer3.04/src/kurtz/libbasedir'
cc -O -I/usr/pkg/include -I/usr/pkg/include -c -o cleanMUMcand.o cleanMUMcand.c
cc -O -I/usr/pkg/include -I/usr/pkg/include -c -o clock.o clock.c
cc -O -I/usr/pkg/include -I/usr/pkg/include -c -o mapfile.o mapfile.c
cc -O -I/usr/pkg/include -I/usr/pkg/include -c -o multiseq.o multiseq.c
cc -O -I/usr/pkg/include -I/usr/pkg/include -c -o procopt.o procopt.c
cc -O -I/usr/pkg/include -I/usr/pkg/include -c -o safescpy.o safescpy.c
cc -O -I/usr/pkg/include -I/usr/pkg/include -c -o seterror.o seterror.c
cc -O -I/usr/pkg/include -I/usr/pkg/include -c -o space.o space.c
ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o
ar: creating libbase.a
ar: writing libbase.a
a - cleanMUMcand.o
a - clock.o
a - mapfile.o
a - multiseq.o
a - procopt.o
a - safescpy.o
a - seterror.o
a - space.o
gmake[2]: Leaving directory `/work/pkgbuild/biology/mummer/work/MUMmer3.04/src/kurtz/libbasedir'
cd streesrc; /usr/pkg/bin/gmake libstree.a
gmake[2]: Entering directory `/work/pkgbuild/biology/mummer/work/MUMmer3.04/src/kurtz/streesrc'
cc -I../libbasedir -DSTREEHUGE -I/usr/pkg/include -c -o construct.o construct.c
cc -I../libbasedir -DSTREEHUGE -I/usr/pkg/include -c -o access.o access.c
cc -I../libbasedir -DSTREEHUGE -I/usr/pkg/include -c -o scanpref.o scanpref.c
cc -I../libbasedir -DSTREEHUGE -I/usr/pkg/include -c -o linkloc.o linkloc.c
cc -I../libbasedir -DSTREEHUGE -I/usr/pkg/include -c -o depthtab.o depthtab.c
cc -I../libbasedir -DSTREEHUGE -I/usr/pkg/include -c -o ex2leav.o ex2leav.c
cc -I../libbasedir -DSTREEHUGE -I/usr/pkg/include -c -o dfs.o dfs.c
cc -I../libbasedir -DSTREEHUGE -I/usr/pkg/include -c -o overmax.o overmax.c
cc -I../libbasedir -DSTREEHUGE -I/usr/pkg/include -c -o oversucc.o oversucc.c
cc -I../libbasedir -DSTREEHUGE -I/usr/pkg/include -c -o addleafcount.o addleafcount.c
cc -I../libbasedir -DSTREEHUGE -I/usr/pkg/include -c -o iterator.o iterator.c
ar ruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o
ar: creating libstree.a
ar: writing libstree.a
a - construct.o
a - access.o
a - scanpref.o
a - linkloc.o
a - depthtab.o
a - ex2leav.o
a - dfs.o
a - overmax.o
a - oversucc.o
a - addleafcount.o
a - iterator.o
gmake[2]: Leaving directory `/work/pkgbuild/biology/mummer/work/MUMmer3.04/src/kurtz/streesrc'
cd mm3src; /usr/pkg/bin/gmake mummer
gmake[2]: Entering directory `/work/pkgbuild/biology/mummer/work/MUMmer3.04/src/kurtz/mm3src'
cc -I../libbasedir -I../streesrc -I/usr/pkg/include -c -o maxmat3.o maxmat3.c
cc -I../libbasedir -I../streesrc -I/usr/pkg/include -c -o maxmatopt.o maxmatopt.c
cc -I../libbasedir -I../streesrc -I/usr/pkg/include -c -o maxmatinp.o maxmatinp.c
cc -I../libbasedir -I../streesrc -I/usr/pkg/include -c -o findmumcand.o findmumcand.c
cc -I../libbasedir -I../streesrc -I/usr/pkg/include -c -o findmaxmat.o findmaxmat.c
cc -I../libbasedir -I../streesrc -I/usr/pkg/include -c -o procmaxmat.o procmaxmat.c
cc -L/usr/pkg/lib -R/usr/pkg/lib maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a\
-o /work/pkgbuild/biology/mummer/work/MUMmer3.04/mummer; chmod 755 /work/pkgbuild/biology/mummer/work/MUMmer3.04/mummer
gmake[2]: Leaving directory `/work/pkgbuild/biology/mummer/work/MUMmer3.04/src/kurtz/mm3src'
gmake[1]: Leaving directory `/work/pkgbuild/biology/mummer/work/MUMmer3.04/src/kurtz'
cd /work/pkgbuild/biology/mummer/work/MUMmer3.04/src/tigr; /usr/pkg/bin/gmake all
gmake[1]: Entering directory `/work/pkgbuild/biology/mummer/work/MUMmer3.04/src/tigr'
CC -I/usr/pkg/include tigrinc.cc -c -o tigrinc.o
"/usr/include/sys/time.h", line 50: Error: Type name expected instead of "time_t".
"tigrinc.hh", line 33: Error: "," expected instead of "*".
"tigrinc.hh", line 38: Error: Operand expected instead of ",".
"tigrinc.hh", line 38: Error: There must be an identifier to declare.
"tigrinc.hh", line 38: Error: There must be an identifier to declare.
"tigrinc.hh", line 38: Error: No direct declarator preceding "[".
"tigrinc.hh", line 38: Error: A declaration does not specify a tag or an identifier.
"tigrinc.hh", line 38: Error: Use ";" to terminate declarations.
"tigrinc.hh", line 38: Error: A declaration was expected instead of ")".
"tigrinc.cc", line 4: Error: Multiple declaration for FILE.
"tigrinc.cc", line 4: Error: "," expected instead of "*".
"tigrinc.cc", line 12: Error: Filename is not defined.
"tigrinc.cc", line 12: Error: Mode is not defined.
"tigrinc.cc", line 13: Error: A declaration was expected instead of "if".
"tigrinc.cc", line 13: Error: ")" expected instead of "==".
"tigrinc.cc", line 17: Error: A declaration was expected instead of "}".
"tigrinc.cc", line 19: Error: A declaration was expected instead of "return".
"tigrinc.cc", line 19: Error: Multiple declaration for fp.
"tigrinc.cc", line 20: Error: A declaration was expected instead of "}".
"tigrinc.cc", line 32: Error: The function "calloc" must have a prototype.
"tigrinc.cc", line 33: Warning: The variable P has not yet been assigned a value.
"tigrinc.cc", line 35: Error: The function "fprintf" must have a prototype.
"tigrinc.cc", line 37: Error: Only a function may be called.
"tigrinc.cc", line 53: Error: The function "malloc" must have a prototype.
"tigrinc.cc", line 54: Warning: The variable P has not yet been assigned a value.
"tigrinc.cc", line 56: Error: The function "fprintf" must have a prototype.
"tigrinc.cc", line 58: Error: Only a function may be called.
Compilation aborted, too many Error messages.
gmake[1]: *** [tigrinc.o] Error 1
gmake[1]: Leaving directory `/work/pkgbuild/biology/mummer/work/MUMmer3.04/src/tigr'
gmake: *** [tigr] Error 2
*** Error code 2
Stop.
bmake: stopped in /usr/pkgsrc/biology/mummer
*** Error code 1
Stop.
bmake: stopped in /usr/pkgsrc/biology/mummer
BULK> mummer-3.04 was marked as broken:
-rw-r--r-- 1 root other 9121 Jun 7 08:40 .broken.html
/usr/pkg/bin/bmake deinstall
===> Deinstalling for mummer
BULK> Marking all packages which depend upon mummer-3.04 as broken:
BULK> Build for mummer-3.04 was not successful, aborting.
mirror server hosted at Truenetwork, Russian Federation.