Last updated on 2026-03-02 17:51:48 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 14 | ||
| mlr | 2 | 12 | |
| mlr3pipelines | 3 | 11 | |
| mlrMBO | 5 | 9 | |
| paradox | 14 | ||
| ParamHelpers | 14 |
Current CRAN status: OK: 14
Current CRAN status: NOTE: 2, OK: 12
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, OK: 11
Version: 0.11.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [91s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-03 01:11:57.587814: Isomap START
> test_pipeop_isomap.R: 2026-03-03 01:11:57.58805: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:57.59088: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:57.596528: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 01:11:57.609273: Isomap START
> test_pipeop_isomap.R: 2026-03-03 01:11:57.609409: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:57.611555: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:57.617656: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 01:11:57.625023: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 01:11:57.625191: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:57.629561: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:57.644406: embedding
> test_pipeop_isomap.R: 2026-03-03 01:11:57.644793: DONE
> test_pipeop_isomap.R: 2026-03-03 01:11:57.650757: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 01:11:57.650879: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:57.655278: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:57.67081: embedding
> test_pipeop_isomap.R: 2026-03-03 01:11:57.671201: DONE
> test_pipeop_isomap.R: 2026-03-03 01:11:57.713139: Isomap START
> test_pipeop_isomap.R: 2026-03-03 01:11:57.713259: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:57.717754: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:57.752579: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 01:11:57.7619: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 01:11:57.762104: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:57.771024: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:57.854227: embedding
> test_pipeop_isomap.R: 2026-03-03 01:11:57.855258: DONE
> test_pipeop_isomap.R: 2026-03-03 01:11:57.896271: Isomap START
> test_pipeop_isomap.R: 2026-03-03 01:11:57.896463: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:57.898962: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:57.905291: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 01:11:57.913144: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 01:11:57.913301: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:57.917767: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:57.932763: embedding
> test_pipeop_isomap.R: 2026-03-03 01:11:57.933136: DONE
> test_pipeop_isomap.R: 2026-03-03 01:11:57.967147: Isomap START
> test_pipeop_isomap.R: 2026-03-03 01:11:57.967282: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:57.969446: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:57.975729: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 01:11:57.986985: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 01:11:57.987141: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:57.991651: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:58.00653: embedding
> test_pipeop_isomap.R: 2026-03-03 01:11:58.006897: DONE
> test_pipeop_isomap.R: 2026-03-03 01:11:58.025638: Isomap START
> test_pipeop_isomap.R: 2026-03-03 01:11:58.025767: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:58.028119: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:58.033957: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 01:11:58.04605: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 01:11:58.046218: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:58.050811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:58.065907: embedding
> test_pipeop_isomap.R: 2026-03-03 01:11:58.066349: DONE
> test_pipeop_isomap.R: 2026-03-03 01:11:58.085016: Isomap START
> test_pipeop_isomap.R: 2026-03-03 01:11:58.085151: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:58.087559: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:58.0938: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 01:11:58.112386: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 01:11:58.112538: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:58.116696: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:58.13032: embedding
> test_pipeop_isomap.R: 2026-03-03 01:11:58.13068: DONE
> test_pipeop_isomap.R: 2026-03-03 01:11:58.148737: Isomap START
> test_pipeop_isomap.R: 2026-03-03 01:11:58.148845: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:58.150844: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:58.156922: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 01:11:58.169139: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 01:11:58.169349: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:58.173792: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:58.188758: embedding
> test_pipeop_isomap.R: 2026-03-03 01:11:58.189187: DONE
> test_pipeop_isomap.R: 2026-03-03 01:11:58.210781: Isomap START
> test_pipeop_isomap.R: 2026-03-03 01:11:58.210955: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:58.213329: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:58.219367: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 01:11:58.237304: Isomap START
> test_pipeop_isomap.R: 2026-03-03 01:11:58.237426: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:58.239781: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:58.245963: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 01:11:58.251605: Isomap START
> test_pipeop_isomap.R: 2026-03-03 01:11:58.251709: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 01:11:58.254161: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 01:11:58.260308: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_info.R:3:1',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [260s/251s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-02 09:05:46.124872: Isomap START
> test_pipeop_isomap.R: 2026-03-02 09:05:46.125398: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:46.137877: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:46.166966: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 09:05:46.223109: Isomap START
> test_pipeop_isomap.R: 2026-03-02 09:05:46.223414: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:46.230329: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:46.258009: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 09:05:46.287913: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 09:05:46.288342: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:46.313163: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:46.365904: embedding
> test_pipeop_isomap.R: 2026-03-02 09:05:46.367022: DONE
> test_pipeop_isomap.R: 2026-03-02 09:05:46.392311: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 09:05:46.392611: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:46.417506: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:46.47633: embedding
> test_pipeop_isomap.R: 2026-03-02 09:05:46.477443: DONE
> test_pipeop_isomap.R: 2026-03-02 09:05:46.652806: Isomap START
> test_pipeop_isomap.R: 2026-03-02 09:05:46.653095: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:46.676047: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:46.812953: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 09:05:46.854718: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 09:05:46.855156: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:46.898957: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:47.175534: embedding
> test_pipeop_isomap.R: 2026-03-02 09:05:47.179248: DONE
> test_pipeop_isomap.R: 2026-03-02 09:05:47.393708: Isomap START
> test_pipeop_isomap.R: 2026-03-02 09:05:47.393992: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:47.411071: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:47.429052: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 09:05:47.464072: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 09:05:47.464501: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:47.487306: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:47.538053: embedding
> test_pipeop_isomap.R: 2026-03-02 09:05:47.539204: DONE
> test_pipeop_isomap.R: 2026-03-02 09:05:47.692416: Isomap START
> test_pipeop_isomap.R: 2026-03-02 09:05:47.692714: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:47.705296: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:47.733541: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 09:05:47.780891: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 09:05:47.781317: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:47.806543: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:47.8653: embedding
> test_pipeop_isomap.R: 2026-03-02 09:05:47.873572: DONE
> test_pipeop_isomap.R: 2026-03-02 09:05:47.956919: Isomap START
> test_pipeop_isomap.R: 2026-03-02 09:05:47.957214: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:47.969253: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:47.992018: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 09:05:48.061711: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 09:05:48.062175: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:48.087023: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:48.174082: embedding
> test_pipeop_isomap.R: 2026-03-02 09:05:48.17927: DONE
> test_pipeop_isomap.R: 2026-03-02 09:05:48.285199: Isomap START
> test_pipeop_isomap.R: 2026-03-02 09:05:48.285501: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:48.29582: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:48.332826: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 09:05:48.39625: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 09:05:48.396699: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:48.423243: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:48.484595: embedding
> test_pipeop_isomap.R: 2026-03-02 09:05:48.485736: DONE
> test_pipeop_isomap.R: 2026-03-02 09:05:48.564006: Isomap START
> test_pipeop_isomap.R: 2026-03-02 09:05:48.564321: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:48.576813: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:48.604925: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 09:05:48.650493: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 09:05:48.650933: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:48.692145: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:48.782999: embedding
> test_pipeop_isomap.R: 2026-03-02 09:05:48.784257: DONE
> test_pipeop_isomap.R: 2026-03-02 09:05:48.918627: Isomap START
> test_pipeop_isomap.R: 2026-03-02 09:05:48.918965: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:48.92618: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:48.9544: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 09:05:49.05786: Isomap START
> test_pipeop_isomap.R: 2026-03-02 09:05:49.058175: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:49.07633: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:49.101207: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 09:05:49.145322: Isomap START
> test_pipeop_isomap.R: 2026-03-02 09:05:49.145626: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 09:05:49.174852: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 09:05:49.202606: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_branching.R:26:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_info.R:3:1',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_smote.R:10:3', 'test_pipeop_splines.R:3:1',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'testthat.R' [159s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-02 16:01:26.914802: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:26.915483: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:26.926391: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:26.942539: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:26.988783: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:26.989215: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:26.996122: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.010592: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:27.036429: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.037014: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.050678: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.084709: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:27.086: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:27.11051: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.110941: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.126776: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.160803: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:27.162096: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:27.239744: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.240158: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.255286: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.33571: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:27.369562: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.370175: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.400858: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.563574: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:27.567403: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:27.724642: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.725072: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.732284: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.746883: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:27.776446: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.777027: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.79114: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.82513: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:27.826268: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:27.954908: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.955332: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.962962: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.977572: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:28.023456: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.024124: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.038666: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.07288: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:28.073899: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:28.162303: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.162708: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.169392: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.184135: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:28.243645: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.244323: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.261101: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.301707: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:28.302877: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:28.384241: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.38475: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.393798: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.411704: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:28.46269: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.463368: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.479262: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.5201: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:28.521374: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:28.619726: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.620295: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.630046: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.649573: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:28.70513: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.70582: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.723847: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.764476: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:28.765978: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:28.852414: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.852884: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.861266: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.876199: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:28.946974: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.947399: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.955157: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.969785: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:28.991557: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.991984: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.999716: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:29.014548: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_dictionary.R:7:3', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_copy.R:5:3',
'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3',
'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_ensemble.R:3:1', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_info.R:3:1',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_learnerpicvplus.R:2:1', 'test_pipeop_learnercv.R:3:3',
'test_pipeop_learnercv.R:43:3', 'test_pipeop_learnercv.R:73:3',
'test_pipeop_learnercv.R:92:3', 'test_pipeop_learnercv.R:141:3',
'test_pipeop_learnercv.R:157:3', 'test_pipeop_learnercv.R:203:3',
'test_pipeop_learnercv.R:249:3', 'test_pipeop_learnercv.R:278:3',
'test_pipeop_learnercv.R:332:3', 'test_pipeop_learnercv.R:359:3',
'test_pipeop_learnercv.R:389:3', 'test_pipeop_learnercv.R:399:3',
'test_pipeop_learnercv.R:432:3', 'test_pipeop_learnercv.R:472:3',
'test_pipeop_learnercv.R:481:3', 'test_pipeop_learnercv.R:498:3',
'test_pipeop_learnercv.R:506:3', 'test_pipeop_learnercv.R:530:3',
'test_pipeop_learnercv.R:554:3', 'test_pipeop_learnercv.R:634:3',
'test_pipeop_learnercv.R:654:3', 'test_pipeop_learnercv.R:669:3',
'test_pipeop_learnercv.R:754:3', 'test_pipeop_learnercv.R:799:3',
'test_pipeop_learnercv.R:827:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:2:1',
'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_spatialsign.R:3:1', 'test_pipeop_splines.R:3:1',
'test_pipeop_nmf.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_ppl.R:63:3',
'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3',
'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 9
Version: 1.1.5.1
Check: Rd files
Result: NOTE
checkRd: (-1) MBOMultiObjResult.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:11-13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:9-11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:13-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:18-20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mbo_parallel.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mbo_parallel.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setMBOControlMultiObj.Rd:119-120: Lost braces
119 | Notes in Computer Science, ISBN 978-3-642-37139-4, pp. 756{770,
| ^
checkRd: (-1) trafos.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) trafos.Rd:29: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14