CRAN Package Check Results for Maintainer ‘Dominguez Vidana Socorro <s.dominguez at ht-data.com>’

Last updated on 2025-07-10 06:50:55 CEST.

Package	ERROR	OK
neotoma2	7	6

Package neotoma2

Current CRAN status: ERROR: 7, OK: 6

Additional issues

M1mac

Version: 1.0.6
Check: examples
Result: ERROR Running examples in ‘neotoma2-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: cite_data,sites-method > ### Title: Obtain data citations from multiple records. > ### Aliases: cite_data,sites-method > > ### ** Examples > > { + ds <- get_datasets(1) + cite_data(ds) + } Error in `map()`: ℹ In index: 1. Caused by error in `map()`: ℹ In index: 1. Caused by error in `x$agerange[[1]]`: ! subscript out of bounds Backtrace: ▆ 1. ├─neotoma2::get_datasets(1) 2. ├─neotoma2:::get_datasets.numeric(1) 3. │ └─neotoma2:::parse_dataset(result) 4. │ └─purrr::map(...) 5. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 6. │ ├─purrr:::with_indexed_errors(...) 7. │ │ └─base::withCallingHandlers(...) 8. │ ├─purrr:::call_with_cleanup(...) 9. │ └─neotoma2 (local) .f(.x[[i]], ...) 10. │ └─purrr::map(x$site$datasets, build_dataset) 11. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 12. │ ├─purrr:::with_indexed_errors(...) 13. │ │ └─base::withCallingHandlers(...) 14. │ ├─purrr:::call_with_cleanup(...) 15. │ └─neotoma2 (local) .f(.x[[i]], ...) 16. │ ├─methods::new(...) 17. │ │ ├─methods::initialize(value, ...) 18. │ │ └─methods::initialize(value, ...) 19. │ ├─neotoma2:::use_na(testNull(x$agerange[[1]]$ageold, NA), "int") 20. │ └─neotoma2:::testNull(x$agerange[[1]]$ageold, NA) 21. └─purrr (local) `<fn>`(`<sbscOOBE>`) 22. └─cli::cli_abort(...) 23. └─rlang::abort(...) Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 1.0.6
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘neotoma2-package.Rmd’ using rmarkdown Quitting from neotoma2-package.Rmd:228-232 [getdatasetsbyid] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'neotoma2-package.Rmd' failed with diagnostics: ℹ In index: 1. Caused by error in `map()`: ℹ In index: 1. Caused by error in `x$agerange[[1]]`: ! subscript out of bounds --- failed re-building ‘neotoma2-package.Rmd’ SUMMARY: processing the following file failed: ‘neotoma2-package.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 1.0.6
Check: examples
Result: ERROR Running examples in ‘neotoma2-Ex.R’ failed The error most likely occurred in: > ### Name: cite_data,sites-method > ### Title: Obtain data citations from multiple records. > ### Aliases: cite_data,sites-method > > ### ** Examples > > { + ds <- get_datasets(1) + cite_data(ds) + } Error in `map()`: ℹ In index: 1. Caused by error in `map()`: ℹ In index: 1. Caused by error in `x$agerange[[1]]`: ! subscript out of bounds Backtrace: ▆ 1. ├─neotoma2::get_datasets(1) 2. ├─neotoma2:::get_datasets.numeric(1) 3. │ └─neotoma2:::parse_dataset(result) 4. │ └─purrr::map(...) 5. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 6. │ ├─purrr:::with_indexed_errors(...) 7. │ │ └─base::withCallingHandlers(...) 8. │ ├─purrr:::call_with_cleanup(...) 9. │ └─neotoma2 (local) .f(.x[[i]], ...) 10. │ └─purrr::map(x$site$datasets, build_dataset) 11. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 12. │ ├─purrr:::with_indexed_errors(...) 13. │ │ └─base::withCallingHandlers(...) 14. │ ├─purrr:::call_with_cleanup(...) 15. │ └─neotoma2 (local) .f(.x[[i]], ...) 16. │ ├─methods::new(...) 17. │ │ ├─methods::initialize(value, ...) 18. │ │ └─methods::initialize(value, ...) 19. │ ├─neotoma2:::use_na(testNull(x$agerange[[1]]$ageold, NA), "int") 20. │ └─neotoma2:::testNull(x$agerange[[1]]$ageold, NA) 21. └─purrr (local) `<fn>`(`<sbscOOBE>`) 22. └─cli::cli_abort(...) 23. └─rlang::abort(...) Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 1.0.6
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘neotoma2-package.Rmd’ using rmarkdown Quitting from neotoma2-package.Rmd:228-232 [getdatasetsbyid] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'neotoma2-package.Rmd' failed with diagnostics: ℹ In index: 1. Caused by error in `map()`: ℹ In index: 1. Caused by error in `x$agerange[[1]]`: ! subscript out of bounds --- failed re-building ‘neotoma2-package.Rmd’ SUMMARY: processing the following file failed: ‘neotoma2-package.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-windows-x86_64, r-oldrel-windows-x86_64