Last updated on 2026-02-07 17:50:20 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [2m/11m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.670, system: 0.074, elapsed: 2.814 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.731, system: 0.208, elapsed: 17.730 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.225, system: 0.022, elapsed: 0.535 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 9.435, system: 0.948, elapsed: 11.861 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.004, elapsed: 0.171 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.860, system: 1.293, elapsed: 34.080 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.629, system: 0.038, elapsed: 1.507 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.860, system: 0.345, elapsed: 13.513 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.265, system: 0.022, elapsed: 0.258 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.474, system: 0.984, elapsed: 119.067 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.005, elapsed: 0.526 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.193, system: 1.469, elapsed: 135.881 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.607, system: 0.041, elapsed: 4.998 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.711, system: 0.112, elapsed: 29.718 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.320, system: 0.023, elapsed: 1.630 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.264, system: 1.010, elapsed: 180.766 seconds]
Computing values for grid cells...
... done. [user: 0.196, system: 0.014, elapsed: 0.621 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.362, system: 0.430, elapsed: 3.198 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.163, system: 1.698, elapsed: 223.105 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.652, system: 0.063, elapsed: 6.053 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.688, system: 0.164, elapsed: 29.121 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.020, elapsed: 1.236 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.126, system: 0.968, elapsed: 170.087 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.009, elapsed: 0.195 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 11.364, system: 0.700, elapsed: 41.776 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.991, system: 1.977, elapsed: 250.356 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [2m/14m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.666, system: 0.065, elapsed: 6.857 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.738, system: 0.180, elapsed: 31.682 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.223, system: 0.023, elapsed: 1.210 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.963, system: 1.006, elapsed: 180.750 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.006, elapsed: 0.587 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.339, system: 1.311, elapsed: 222.882 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.662, system: 0.045, elapsed: 5.395 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.684, system: 0.144, elapsed: 32.153 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.220, system: 0.023, elapsed: 1.261 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.949, system: 1.061, elapsed: 181.589 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.005, elapsed: 0.483 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.264, system: 1.377, elapsed: 222.938 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.549, system: 0.050, elapsed: 4.623 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.517, system: 0.149, elapsed: 21.180 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.226, system: 0.030, elapsed: 1.187 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.994, system: 1.019, elapsed: 167.523 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.013, elapsed: 0.336 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.208, system: 0.385, elapsed: 1.637 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.368, system: 1.777, elapsed: 198.239 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.573, system: 0.043, elapsed: 2.652 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.768, system: 0.234, elapsed: 15.983 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.017, elapsed: 1.099 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.914, system: 0.929, elapsed: 150.766 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.004, elapsed: 0.260 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 17.001, system: 0.967, elapsed: 17.804 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 36.303, system: 2.227, elapsed: 189.729 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64