Last updated on 2026-03-23 23:52:28 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 3 | 11 |
Current CRAN status: ERROR: 3, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [101s/374s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.583, system: 0.046, elapsed: 2.596 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.645, system: 0.073, elapsed: 14.517 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.019, elapsed: 0.977 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.403, system: 0.819, elapsed: 73.090 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.003, elapsed: 0.172 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.604, system: 0.986, elapsed: 92.253 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.550, system: 0.043, elapsed: 1.789 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.596, system: 0.089, elapsed: 14.571 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.017, elapsed: 0.793 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.727, system: 0.768, elapsed: 33.766 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.003, elapsed: 0.183 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.871, system: 0.951, elapsed: 51.782 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.559, system: 0.034, elapsed: 1.693 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.419, system: 0.067, elapsed: 11.392 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.016, elapsed: 0.925 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.038, system: 0.724, elapsed: 39.116 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.004, elapsed: 0.279 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.275, system: 0.249, elapsed: 1.106 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.409, system: 1.137, elapsed: 55.303 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.521, system: 0.033, elapsed: 2.119 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.650, system: 0.071, elapsed: 12.632 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.017, elapsed: 0.796 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.013, system: 0.852, elapsed: 123.714 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.007, elapsed: 0.268 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.646, system: 0.604, elapsed: 26.585 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.921, system: 1.609, elapsed: 167.078 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: examples
Result: ERROR
Running examples in 'mapi-Ex.R' failed
The error most likely occurred in:
> ### Name: MAPI_GridHexagonal
> ### Title: Function MAPI_GridHexagonal
> ### Aliases: MAPI_GridHexagonal
>
> ### ** Examples
>
> data("samples")
> # Builds a grid of hexagonal cells according to samples coordinates (columns x and y)
> # using the EPSG:3857 projection and an halfwidth cell value of hw=250m.
> grid <- MAPI_GridHexagonal(samples, crs=3857, hw=250)
Building local cartesian grid...
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/372s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.534, system: 0.040, elapsed: 2.489 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.552, system: 0.055, elapsed: 16.715 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.017, elapsed: 0.941 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.698, system: 0.776, elapsed: 48.243 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.166 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.786, system: 0.920, elapsed: 69.307 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.524, system: 0.033, elapsed: 1.815 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.444, system: 0.099, elapsed: 11.603 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.228, system: 0.018, elapsed: 0.324 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.012, system: 0.866, elapsed: 6.972 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.004, elapsed: 0.178 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.934, system: 1.043, elapsed: 21.514 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.637, system: 0.050, elapsed: 1.680 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.662, system: 0.097, elapsed: 14.725 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.015, elapsed: 0.842 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.707, system: 0.812, elapsed: 108.115 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.004, elapsed: 0.372 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.268, system: 0.314, elapsed: 1.664 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.336, system: 1.317, elapsed: 128.291 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.551, system: 0.037, elapsed: 3.075 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.521, system: 0.065, elapsed: 14.765 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.016, elapsed: 0.961 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.600, system: 0.788, elapsed: 108.292 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.165 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.532, system: 0.731, elapsed: 17.397 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 31.256, system: 1.670, elapsed: 145.779 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64