Last updated on 2025-12-03 05:50:58 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/137s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.811, system: 0.098, elapsed: 3.113 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.816, system: 0.285, elapsed: 15.352 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.018, elapsed: 0.547 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.178, system: 0.267, elapsed: 10.877 seconds]
Computing values for grid cells...
... done. [user: 0.197, system: 0.012, elapsed: 0.610 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.756, system: 0.721, elapsed: 31.663 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.726, system: 0.056, elapsed: 4.987 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.719, system: 0.170, elapsed: 18.163 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.017, elapsed: 0.251 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.160, system: 0.269, elapsed: 5.066 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.016, elapsed: 0.308 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.565, system: 0.570, elapsed: 29.986 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.719, system: 0.085, elapsed: 2.250 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.017, system: 0.366, elapsed: 12.469 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.209, system: 0.023, elapsed: 0.293 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.831, system: 0.240, elapsed: 4.365 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.006, elapsed: 0.168 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.255, system: 0.255, elapsed: 1.382 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.827, system: 1.028, elapsed: 21.722 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.689, system: 0.050, elapsed: 2.752 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.606, system: 0.081, elapsed: 13.797 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.206, system: 0.014, elapsed: 0.348 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.071, system: 0.196, elapsed: 7.067 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.004, elapsed: 0.278 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.961, system: 0.522, elapsed: 18.484 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.388, system: 0.892, elapsed: 43.881 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/133s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.722, system: 0.080, elapsed: 2.036 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.682, system: 0.236, elapsed: 14.445 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.016, elapsed: 0.307 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.895, system: 0.265, elapsed: 5.406 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.007, elapsed: 0.204 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.207, system: 0.634, elapsed: 23.114 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.753, system: 0.075, elapsed: 2.024 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.803, system: 0.288, elapsed: 16.154 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.020, elapsed: 0.343 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.037, system: 0.262, elapsed: 6.357 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.008, elapsed: 0.212 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.525, system: 0.696, elapsed: 25.898 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.760, system: 0.082, elapsed: 2.224 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.730, system: 0.287, elapsed: 12.448 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.017, elapsed: 0.324 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.084, system: 0.303, elapsed: 6.555 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.008, elapsed: 0.257 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.135, system: 0.232, elapsed: 1.198 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.746, system: 0.977, elapsed: 23.985 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.673, system: 0.049, elapsed: 3.606 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.593, system: 0.119, elapsed: 15.151 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.013, elapsed: 0.429 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.823, system: 0.187, elapsed: 7.866 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.344 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.650, system: 0.488, elapsed: 23.359 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.780, system: 0.886, elapsed: 52.148 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64