Last updated on 2025-10-17 12:49:19 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [82s/121s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.599, system: 0.078, elapsed: 2.273 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.226, system: 0.267, elapsed: 14.255 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.016, elapsed: 0.341 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.888, system: 0.279, elapsed: 5.798 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.007, elapsed: 0.196 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.603, system: 0.681, elapsed: 23.621 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.611, system: 0.079, elapsed: 2.015 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.251, system: 0.258, elapsed: 13.233 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.017, elapsed: 0.291 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.946, system: 0.260, elapsed: 6.069 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.008, elapsed: 0.236 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.708, system: 0.657, elapsed: 22.608 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.647, system: 0.073, elapsed: 2.333 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.097, system: 0.278, elapsed: 11.224 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.018, elapsed: 0.355 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.966, system: 0.328, elapsed: 6.158 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.008, elapsed: 0.239 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.218, system: 0.263, elapsed: 1.162 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.914, system: 1.003, elapsed: 22.375 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.629, system: 0.071, elapsed: 2.215 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.048, system: 0.134, elapsed: 15.373 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.013, elapsed: 0.345 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.742, system: 0.175, elapsed: 7.316 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.428 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.298, system: 0.486, elapsed: 18.707 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.720, system: 0.913, elapsed: 45.541 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/124s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.506, system: 0.038, elapsed: 2.290 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.867, system: 0.057, elapsed: 14.274 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.014, elapsed: 0.399 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.541, system: 0.171, elapsed: 5.889 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.006, elapsed: 0.302 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.810, system: 0.309, elapsed: 24.089 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.540, system: 0.041, elapsed: 2.738 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.995, system: 0.103, elapsed: 16.838 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.011, elapsed: 0.295 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.670, system: 0.160, elapsed: 6.259 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.006, elapsed: 0.299 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.093, system: 0.357, elapsed: 27.446 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.530, system: 0.032, elapsed: 2.621 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.854, system: 0.079, elapsed: 13.364 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.182, system: 0.010, elapsed: 0.254 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.516, system: 0.161, elapsed: 5.385 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.012, elapsed: 0.220 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.023, system: 0.231, elapsed: 0.896 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.870, system: 0.553, elapsed: 23.715 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.546, system: 0.050, elapsed: 2.467 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.031, system: 0.217, elapsed: 12.728 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.013, elapsed: 0.259 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.635, system: 0.218, elapsed: 9.058 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.007, elapsed: 0.472 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.055, system: 0.495, elapsed: 15.275 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.245, system: 1.034, elapsed: 41.353 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64