Last updated on 2025-12-26 17:49:19 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [105s/338s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.916, system: 0.127, elapsed: 4.552 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.701, system: 0.594, elapsed: 27.547 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.041, elapsed: 1.386 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.487, system: 0.643, elapsed: 9.744 seconds]
Computing values for grid cells...
... done. [user: 0.195, system: 0.015, elapsed: 0.849 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.237, system: 1.786, elapsed: 47.561 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 2.011, system: 0.154, elapsed: 7.883 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.491, system: 0.493, elapsed: 45.761 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.037, elapsed: 1.354 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 5.305, system: 0.989, elapsed: 29.723 seconds]
Computing values for grid cells...
... done. [user: 0.210, system: 0.024, elapsed: 1.012 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.924, system: 2.019, elapsed: 89.202 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.919, system: 0.137, elapsed: 8.978 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.580, system: 0.539, elapsed: 39.128 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.224, system: 0.056, elapsed: 0.818 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 5.244, system: 0.990, elapsed: 12.153 seconds]
Computing values for grid cells...
... done. [user: 0.188, system: 0.030, elapsed: 0.389 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.479, system: 0.455, elapsed: 2.183 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.494, system: 2.738, elapsed: 68.284 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 2.020, system: 0.178, elapsed: 10.480 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.468, system: 0.358, elapsed: 43.143 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.212, system: 0.032, elapsed: 0.647 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 5.137, system: 0.826, elapsed: 16.231 seconds]
Computing values for grid cells...
... done. [user: 0.214, system: 0.019, elapsed: 0.725 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.031, system: 1.163, elapsed: 35.091 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.946, system: 3.009, elapsed: 110.093 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [100s/455s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.767, system: 0.082, elapsed: 6.668 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.321, system: 0.372, elapsed: 43.735 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.039, elapsed: 1.156 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.895, system: 0.802, elapsed: 23.616 seconds]
Computing values for grid cells...
... done. [user: 0.187, system: 0.011, elapsed: 1.064 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.146, system: 1.765, elapsed: 81.107 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.765, system: 0.070, elapsed: 7.439 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.222, system: 0.336, elapsed: 48.415 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.216, system: 0.040, elapsed: 1.247 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.834, system: 0.930, elapsed: 29.022 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.010, elapsed: 0.781 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.954, system: 1.835, elapsed: 91.940 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.751, system: 0.077, elapsed: 8.269 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.284, system: 0.350, elapsed: 54.299 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.035, elapsed: 1.352 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.915, system: 0.839, elapsed: 28.084 seconds]
Computing values for grid cells...
... done. [user: 0.200, system: 0.015, elapsed: 0.960 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.332, system: 0.459, elapsed: 4.494 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.561, system: 2.200, elapsed: 103.065 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.779, system: 0.100, elapsed: 9.190 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.126, system: 0.270, elapsed: 45.362 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.223, system: 0.040, elapsed: 1.349 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.927, system: 0.971, elapsed: 30.134 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.011, elapsed: 0.735 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.574, system: 0.898, elapsed: 57.823 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 29.685, system: 2.812, elapsed: 152.192 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64