Last updated on 2026-01-16 23:52:28 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [99s/224s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.581, system: 0.043, elapsed: 2.185 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.586, system: 0.077, elapsed: 11.499 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.229, system: 0.019, elapsed: 0.967 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.857, system: 0.691, elapsed: 52.124 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.005, elapsed: 0.255 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.003, system: 0.857, elapsed: 67.737 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.595, system: 0.043, elapsed: 2.442 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.575, system: 0.077, elapsed: 18.774 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.224, system: 0.015, elapsed: 1.186 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.848, system: 0.669, elapsed: 38.076 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.004, elapsed: 0.268 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.993, system: 0.830, elapsed: 61.593 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.571, system: 0.030, elapsed: 2.389 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.586, system: 0.108, elapsed: 11.919 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.314, system: 0.016, elapsed: 0.380 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.860, system: 0.697, elapsed: 9.905 seconds]
Computing values for grid cells...
... done. [user: 0.191, system: 0.005, elapsed: 0.188 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.304, system: 0.358, elapsed: 1.247 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.606, system: 1.256, elapsed: 26.897 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.623, system: 0.045, elapsed: 1.797 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.564, system: 0.100, elapsed: 11.456 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.016, elapsed: 0.369 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.522, system: 0.617, elapsed: 14.871 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.002, elapsed: 0.178 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.338, system: 0.595, elapsed: 30.946 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.166, system: 1.408, elapsed: 60.447 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/222s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.597, system: 0.040, elapsed: 4.091 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.696, system: 0.074, elapsed: 26.223 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.015, elapsed: 0.521 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.328, system: 0.422, elapsed: 12.082 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.005, elapsed: 0.458 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.582, system: 0.580, elapsed: 44.887 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.590, system: 0.029, elapsed: 4.267 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.563, system: 0.061, elapsed: 25.462 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.208, system: 0.014, elapsed: 0.568 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.291, system: 0.404, elapsed: 12.275 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.471 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.386, system: 0.533, elapsed: 44.686 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.582, system: 0.027, elapsed: 4.120 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.646, system: 0.068, elapsed: 25.754 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.014, elapsed: 0.627 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.524, system: 0.452, elapsed: 13.331 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.004, elapsed: 0.449 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.202, system: 0.313, elapsed: 1.957 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.014, system: 0.900, elapsed: 48.131 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.603, system: 0.031, elapsed: 4.062 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.726, system: 0.127, elapsed: 24.539 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.208, system: 0.017, elapsed: 0.545 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.345, system: 0.443, elapsed: 12.426 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.003, elapsed: 0.394 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.814, system: 0.514, elapsed: 27.572 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.538, system: 1.155, elapsed: 71.234 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64