Fits community site occupancy models to environmental DNA metabarcoding data collected using spatially-replicated survey design. Model fitting results can be used to evaluate and compare the effectiveness of species detection to find an efficient survey design. Reference: Fukaya et al. (2022) <doi:10.1111/2041-210X.13732>, Fukaya and Hasebe (2025) <doi:10.1101/2025.01.09.632116>.
| Version: | 1.2.0 |
| Depends: | jagsUI, R (≥ 2.10) |
| Imports: | stats, methods, graphics, checkmate, crayon, knitr |
| Suggests: | covr, rmarkdown, spelling, testthat (≥ 3.0.0), tibble, vdiffr |
| Published: | 2025-05-24 |
| DOI: | 10.32614/CRAN.package.occumb |
| Author: | Keiichi Fukaya [aut, cre], Ken Kellner [cph] (summary method for occumbFit class), Mika Takahashi [aut] |
| Maintainer: | Keiichi Fukaya <fukayak99 at gmail.com> |
| BugReports: | https://github.com/fukayak/occumb/issues |
| License: | GPL (≥ 3) |
| URL: | https://fukayak.github.io/occumb/, https://github.com/fukayak/occumb |
| NeedsCompilation: | no |
| SystemRequirements: | JAGS (http://mcmc-jags.sourceforge.net) |
| Language: | en-US |
| Materials: | README NEWS |
| CRAN checks: | occumb results |
| Reference manual: | occumb.pdf |
| Vignettes: |
Model specification in occumb() (source, R code) Introduction to occumb (source, R code) |
| Package source: | occumb_1.2.0.tar.gz |
| Windows binaries: | r-devel: occumb_1.2.0.zip, r-release: occumb_1.2.0.zip, r-oldrel: occumb_1.2.0.zip |
| macOS binaries: | r-release (arm64): occumb_1.2.0.tgz, r-oldrel (arm64): occumb_1.2.0.tgz, r-release (x86_64): occumb_1.2.0.tgz, r-oldrel (x86_64): occumb_1.2.0.tgz |
| Old sources: | occumb archive |
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