quicR: RT-QuIC Data Formatting and Analysis
Designed for the curation and analysis of data generated from real-time quaking-induced conversion (RT-QuIC) assays first described by Atarashi et al. (2011) <doi:10.1038/nm.2294>. 'quicR' calculates useful metrics such as maxpoint ratio: Rowden et al. (2023) <doi:10.1099/vir.0.069906-0>; time-to-threshold: Shi et al. (2013) <doi:10.1186/2051-5960-1-44>; and maximum slope. Integration with the output from plate readers allows for seamless input of raw data into the R environment.
| Version: | 1.0.2 |
| Imports: | dplyr, ggplot2, openxlsx, readxl, reshape2, slider, stats, stringr, tidyr |
| Suggests: | testthat (≥ 3.1.0) |
| Published: | 2024-11-15 |
| DOI: | 10.32614/CRAN.package.quicR |
| Author: | Gage Rowden  [aut,
cre] |
| Maintainer: | Gage Rowden <gage.rowden1145 at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | quicR results |
Documentation:
| Reference manual: | quicR.pdf |
Downloads:
| Package source: | quicR_1.0.2.tar.gz |
| Windows binaries: | r-devel: quicR_1.0.2.zip, r-release: quicR_1.0.2.zip, r-oldrel: quicR_1.0.2.zip |
| macOS binaries: | r-release (arm64): quicR_1.0.2.tgz, r-oldrel (arm64): quicR_1.0.2.tgz, r-release (x86_64): quicR_1.0.2.tgz, r-oldrel (x86_64): quicR_1.0.2.tgz |
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